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Os04g0617700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.11 (0.0269) R2 : 0.437
β1 : -1.39 (0.0993) R2dD : 0.247 R2D : 0.21
β2 : 1.37 (0.145) R2dC : 0.533 R2C : -0.694
β3 : -1.43 (0.114) R2dE : 0.9 R2E : -0.335
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0501 (0.0579) R2dN8 : 0.00126 R2N8 : 0.00858
σ : 0.503
deviance : 116.83
__
_____
C
peak time of C : 3.06
E
wheather : radiation
threshold : 0.05008
memory length : 206
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
96.79 0.462 8.13 -1.37 0.75 -0.921 -3.23 0.566 0.0193 3.34 0.1727 120 -- --
97.24 0.459 8.13 -1.34 0.753 -0.89 -2.77 -- 0.025 3.71 0.2193 122 -- --
103.73 0.474 8.08 -1.29 1.44 -1.45 -- -1.75 0.116 3.06 0.009913 207 -- --
116.83 0.503 8.11 -1.39 1.37 -1.43 -- -- 0.0501 3.06 0.05008 206 -- --
128.44 0.528 8.08 -1.3 -- -0.486 -- -1.33 0.124 -- 0.009998 148 -- --
135.5 0.546 8.12 -1.27 0.00548 -- 3.07 -- 0.102 16.1 -- -- -- --
136.48 0.547 8.09 -1.23 0.654 -- -- -- 0.118 9.96 -- -- -- --
135.13 0.541 8.12 -1.22 -- -0.513 -- -- 0.0914 -- 0.1701 119 -- --
166.09 0.6 8.08 -- 1.35 -1.4 -- -- 0.206 3.02 0.3197 200 -- --
162.15 0.595 8.11 -1.23 -- -- -- -- 0.118 -- -- -- -- --
176.09 0.621 8.06 -- 0.658 -- -- -- 0.255 10.1 -- -- -- --
173.96 0.614 8.08 -- -- -0.517 -- -- 0.194 -- 4.842 32 -- --
202.29 0.664 8.08 -- -- -- -- -- 0.255 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.85 temperature 20.0 270 > th dose independent rect. 5 3
2 80.94 temperature 15.0 270 > th dose dependent rect. 4 5
3 81.16 temperature 15.0 270 > th dose dependent rect. 5 3
5 82.13 temperature 20.0 270 > th dose independent rect. 4 5
21 85.09 humidity 80.0 270 > th dose independent rect. 5 3
22 85.33 radiation 1.0 90 < th dose dependent sin 7 NA
27 85.89 radiation 1.0 90 < th dose independent sin 8 NA
29 86.11 wind 7.0 270 < th dose dependent rect. 5 4
31 86.23 radiation 1.0 90 > th dose independent sin 8 NA
32 86.23 wind 9.0 90 < th dose dependent rect. 5 6
33 86.34 wind 3.0 270 < th dose independent rect. 5 4
37 86.57 radiation 40.0 270 < th dose independent rect. 4 5
40 86.66 humidity 60.0 90 > th dose independent rect. 5 6
42 86.68 wind 9.0 90 < th dose independent rect. 11 18
45 86.90 atmosphere 995.0 90 > th dose independent rect. 5 6
46 86.90 atmosphere 1015.0 90 < th dose independent rect. 5 6
47 86.90 temperature 10.0 90 > th dose independent rect. 11 18
51 86.93 precipitation 0.1 270 < th dose independent rect. 9 19
53 86.93 precipitation 0.1 270 < th dose dependent rect. 9 19
54 86.94 wind 7.0 90 < th dose independent rect. 5 6
57 86.95 precipitation 0.1 90 < th dose independent rect. 5 6
58 86.95 precipitation 0.1 90 < th dose dependent rect. 5 6
61 87.02 wind 9.0 270 < th dose independent rect. 9 19
68 87.15 humidity 50.0 270 > th dose dependent rect. 5 3
78 87.22 temperature 10.0 270 > th dose independent rect. 9 19
79 87.27 radiation 1.0 90 > th dose independent rect. 18 17
86 87.40 radiation 30.0 270 < th dose independent rect. 5 3
91 87.45 temperature 10.0 10 > th dose dependent rect. 6 14
101 87.73 temperature 30.0 270 < th dose independent rect. 4 5
102 87.73 precipitation 0.1 90 < th dose independent rect. 11 18
105 87.73 precipitation 0.1 90 < th dose dependent rect. 11 18
118 87.91 radiation 1.0 90 > th dose independent rect. 4 7
131 88.01 wind 5.0 30 < th dose independent rect. 20 10
134 88.02 precipitation 0.1 270 < th dose independent rect. 5 3
136 88.02 precipitation 0.1 270 < th dose dependent rect. 5 3
139 88.04 temperature 10.0 270 > th dose independent rect. 5 3
141 88.04 temperature 30.0 270 < th dose independent rect. 5 3
144 88.04 atmosphere 995.0 270 > th dose independent rect. 5 3
145 88.04 atmosphere 1015.0 270 < th dose independent rect. 5 3
146 88.04 temperature 10.0 270 > th dose independent rect. 8 21
160 88.14 temperature 20.0 30 > th dose independent rect. 6 14
161 88.18 wind 9.0 10 < th dose dependent rect. 20 10
171 88.55 radiation 40.0 270 < th dose dependent rect. 5 4
193 89.06 radiation 1.0 270 > th dose independent rect. 18 14
194 89.08 radiation 10.0 10 < th dose independent rect. 20 10
199 89.18 temperature 10.0 10 > th dose dependent rect. 6 18
212 89.51 radiation 40.0 10 < th dose dependent rect. 20 10
213 89.54 wind 9.0 10 < th dose dependent rect. 6 6
215 89.55 atmosphere 995.0 10 > th dose independent rect. 6 14
216 89.56 wind 9.0 10 < th dose independent rect. 20 10
217 89.57 temperature 10.0 10 > th dose independent rect. 20 10
218 89.57 temperature 30.0 10 < th dose independent rect. 20 10
219 89.57 humidity 50.0 10 > th dose independent rect. 20 10
222 89.57 atmosphere 995.0 10 > th dose independent rect. 20 10
226 89.57 temperature 10.0 10 > th dose independent rect. 6 14
228 89.57 atmosphere 1015.0 10 < th dose independent rect. 6 14
235 89.65 precipitation 0.1 30 < th dose independent rect. 20 10
236 89.65 precipitation 0.1 30 < th dose dependent rect. 20 10
244 89.78 radiation 1.0 270 > th dose independent rect. 4 4
264 89.86 precipitation 0.1 10 < th dose independent rect. 6 14
266 89.86 precipitation 0.1 10 < th dose dependent rect. 6 14
275 89.99 wind 9.0 10 < th dose independent rect. 6 14
292 90.05 radiation 40.0 10 < th dose dependent rect. 6 6
298 90.08 wind 1.0 10 > th dose independent rect. 6 14
321 90.14 temperature 10.0 10 > th dose dependent rect. 6 16
322 90.15 temperature 10.0 10 > th dose dependent rect. 6 5
335 90.32 humidity 50.0 10 > th dose dependent rect. 6 6
341 90.37 temperature 10.0 1440 > th dose independent rect. 21 10
344 90.37 temperature 30.0 1440 < th dose independent rect. 21 10
348 90.37 humidity 50.0 1440 > th dose independent rect. 21 10
353 90.37 atmosphere 995.0 1440 > th dose independent rect. 21 10
354 90.37 radiation 40.0 1440 < th dose independent rect. 21 10
358 90.37 temperature 10.0 1440 > th dose independent rect. 7 14
364 90.38 wind 9.0 10 < th dose dependent rect. 12 18
386 90.62 radiation 1.0 270 > th dose independent rect. 6 1
391 90.70 humidity 50.0 10 > th dose independent rect. 6 6
396 90.76 atmosphere 995.0 90 > th dose independent rect. 11 18
403 90.83 temperature 25.0 10 > th dose independent rect. 5 6
414 90.86 humidity 50.0 270 > th dose independent rect. 9 19
418 90.89 atmosphere 995.0 270 > th dose independent rect. 9 19
426 90.98 atmosphere 1015.0 90 < th dose independent rect. 11 18
439 91.06 wind 1.0 90 > th dose independent rect. 5 6
445 91.11 atmosphere 995.0 270 > th dose dependent rect. 5 3
448 91.18 wind 1.0 270 > th dose independent rect. 9 19
450 91.23 wind 9.0 10 < th dose independent rect. 12 18
471 91.38 precipitation 0.1 10 < th dose independent rect. 12 18
472 91.38 precipitation 0.1 10 < th dose dependent rect. 12 18
478 91.43 wind 9.0 10 < th dose independent rect. 6 6
480 91.43 temperature 15.0 10 > th dose independent rect. 12 18
482 91.45 temperature 10.0 10 > th dose independent rect. 6 6
484 91.45 atmosphere 995.0 10 > th dose independent rect. 6 6
485 91.45 atmosphere 1015.0 10 < th dose independent rect. 6 6
489 91.47 radiation 40.0 10 < th dose independent rect. 6 5
498 91.57 precipitation 0.1 10 < th dose independent rect. 6 6
500 91.57 precipitation 0.1 10 < th dose dependent rect. 6 6
548 91.93 atmosphere 995.0 90 > th dose dependent rect. 5 6
557 92.00 atmosphere 1015.0 270 < th dose independent rect. 9 19
596 92.11 atmosphere 995.0 90 > th dose dependent rect. 11 18
610 92.21 humidity 50.0 10 > th dose dependent rect. 20 10
623 92.28 atmosphere 995.0 10 > th dose dependent rect. 6 5
657 92.50 atmosphere 995.0 10 > th dose dependent rect. 20 10
663 92.54 temperature 30.0 90 < th dose independent rect. 11 18
664 92.55 humidity 50.0 10 > th dose independent rect. 12 18
710 92.71 wind 1.0 270 > th dose independent rect. 5 3
715 92.73 atmosphere 995.0 10 > th dose dependent rect. 12 18
720 92.75 atmosphere 1015.0 10 < th dose independent rect. 20 10
743 92.93 temperature 10.0 1440 > th dose independent rect. 7 5
746 92.93 atmosphere 995.0 1440 > th dose independent rect. 7 5
747 92.93 temperature 10.0 1440 > th dose independent rect. 12 19
755 92.95 wind 5.0 270 < th dose independent rect. 22 6
816 93.14 precipitation 0.1 270 < th dose independent rect. 21 8
818 93.14 precipitation 0.1 270 < th dose dependent rect. 21 8
848 93.26 temperature 30.0 10 < th dose independent rect. 6 5
859 93.29 radiation 1.0 10 > th dose independent rect. 6 6
872 93.36 wind 9.0 30 < th dose dependent rect. 6 14
874 93.38 wind 1.0 10 > th dose independent rect. 6 6
891 93.44 wind 9.0 270 < th dose dependent rect. 21 7
913 93.52 radiation 40.0 90 < th dose independent rect. 11 18
926 93.59 radiation 40.0 10 < th dose independent rect. 12 18
947 93.70 wind 1.0 10 > th dose independent rect. 6 16