BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0617700 Os04g0617700|J100079D11
         (61 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16500.1  | chr1:5639079-5639995 FORWARD LENGTH=260             47   2e-06
AT1G79160.1  | chr1:29779862-29780668 REVERSE LENGTH=240           45   8e-06

>AT1G16500.1 | chr1:5639079-5639995 FORWARD LENGTH=260
          Length = 259

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 14/56 (25%)

Query: 1   AAACPSCLTYVLIAEADPRCPRCAGNVPPLAGKPREXXXXXXXXXXKKPKIDLNAA 56
           AA CP CL+YV +A+ +P+CPRC   VP  A               KKPKIDLN +
Sbjct: 217 AAGCPGCLSYVFVAKNNPKCPRCHSFVPLPA--------------MKKPKIDLNIS 258



>AT1G79160.1 | chr1:29779862-29780668 REVERSE LENGTH=240
          Length = 239

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 11/56 (19%)

Query: 1   AAACPSCLTYVLIAEADPRCPRCAGNVPPLAGKPREXXXXXXXXXXKKPKIDLNAA 56
            A CP CL+YVL+   +P+CPRC   + PL   P +          KKPKIDLN +
Sbjct: 194 VAGCPGCLSYVLVMMNNPKCPRC-DTIVPLPTNPMK----------KKPKIDLNIS 238



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.134    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,204,707
Number of extensions: 27716
Number of successful extensions: 61
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 61
Length of database: 11,106,569
Length adjustment: 34
Effective length of query: 27
Effective length of database: 10,174,425
Effective search space: 274709475
Effective search space used: 274709475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)