Os04g0616300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os04g0616300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.91 | 0.552 | 8.77 | -0.386 | 1.29 | 1.07 | 0.231 | -0.534 | 0.582 | 21 | 20.35 | 946 | -- | -- |
| 138.6 | 0.548 | 8.76 | -0.299 | 1.28 | 1.14 | 0.146 | -- | 0.599 | 21 | 20.4 | 948 | -- | -- |
| 138.08 | 0.547 | 8.77 | -0.381 | 1.29 | 1.08 | -- | -0.458 | 0.585 | 21 | 20.36 | 948 | -- | -- |
| 138.62 | 0.548 | 8.75 | -0.3 | 1.28 | 1.14 | -- | -- | 0.602 | 21 | 20.4 | 948 | -- | -- |
| 226.67 | 0.701 | 8.74 | -0.428 | -- | 1.46 | -- | -0.127 | 0.515 | -- | 20.28 | 774 | -- | -- |
| 171.86 | 0.615 | 8.7 | 0.144 | 1.41 | -- | 0.0232 | -- | 0.847 | 21.3 | -- | -- | -- | -- |
| 171.86 | 0.614 | 8.7 | 0.143 | 1.41 | -- | -- | -- | 0.847 | 21.3 | -- | -- | -- | -- |
| 226.64 | 0.701 | 8.73 | -0.393 | -- | 1.47 | -- | -- | 0.532 | -- | 20.23 | 774 | -- | -- |
| 140.7 | 0.552 | 8.74 | -- | 1.28 | 1.04 | -- | -- | 0.653 | 21 | 20.3 | 946 | -- | -- |
| 287.24 | 0.792 | 8.66 | 0.149 | -- | -- | -- | -- | 0.841 | -- | -- | -- | -- | -- |
| 172.4 | 0.614 | 8.71 | -- | 1.41 | -- | -- | -- | 0.831 | 21.3 | -- | -- | -- | -- |
| 230.24 | 0.707 | 8.72 | -- | -- | 1.34 | -- | -- | 0.592 | -- | 20.4 | 770 | -- | -- |
| 287.82 | 0.792 | 8.67 | -- | -- | -- | -- | -- | 0.824 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.29 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 3 | 129.57 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 18 | 130.64 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 21 | 130.75 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 32 | 131.24 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 5 |
| 34 | 131.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 55 | 131.79 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 58 | 131.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 131 | 133.47 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 2 |
| 174 | 134.28 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 2 |
| 212 | 135.04 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 218 | 135.13 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 235 | 135.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 13 |
| 241 | 135.53 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 249 | 135.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 270 | 136.03 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 285 | 136.17 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 318 | 136.51 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 348 | 136.73 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 16 |
| 357 | 136.86 | temperature | 20 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 374 | 136.99 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 14 |
| 379 | 137.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 428 | 137.32 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 430 | 137.34 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 453 | 137.55 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 521 | 137.83 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 528 | 137.86 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 559 | 138.04 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 581 | 138.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 586 | 138.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 631 | 138.46 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 634 | 138.47 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 653 | 138.58 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 684 | 138.73 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 694 | 138.79 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 768 | 139.14 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 788 | 139.19 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 20 |
| 796 | 139.23 | humidity | 70 | 1440 | > th | dose independent | sin | 7 | NA |
| 876 | 139.44 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 911 | 139.52 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 912 | 139.52 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 925 | 139.56 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 927 | 139.57 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 955 | 139.65 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 961 | 139.67 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 985 | 139.76 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |