Os04g0616100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0616100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Tetratricopeptide-like helical domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.15 | 0.421 | 7.08 | -0.117 | 0.734 | -0.895 | 0.528 | 1.66 | 0.29 | 18.2 | 4.428 | 10 | -- | -- |
| 85.84 | 0.432 | 7.07 | -0.0604 | 0.74 | -1.11 | 0.675 | -- | 0.297 | 17.2 | -2.86 | 9 | -- | -- |
| 80.82 | 0.419 | 7.08 | -0.12 | 0.735 | -0.914 | -- | 1.63 | 0.29 | 18.1 | 4.42 | 10 | -- | -- |
| 86.83 | 0.434 | 7.07 | -0.0535 | 0.728 | -0.978 | -- | -- | 0.298 | 17.8 | 1.671 | 9 | -- | -- |
| 108.59 | 0.485 | 7.06 | -0.138 | -- | -0.894 | -- | 1.59 | 0.281 | -- | 0.78 | 10 | -- | -- |
| 100.5 | 0.47 | 7.08 | -0.0769 | 0.857 | -- | -0.175 | -- | 0.3 | 20.3 | -- | -- | -- | -- |
| 100.59 | 0.47 | 7.08 | -0.0712 | 0.858 | -- | -- | -- | 0.3 | 20.3 | -- | -- | -- | -- |
| 114.59 | 0.499 | 7.06 | -0.0855 | -- | -0.904 | -- | -- | 0.283 | -- | -3.269 | 9 | -- | -- |
| 86.91 | 0.434 | 7.07 | -- | 0.738 | -1 | -- | -- | 0.307 | 17.7 | 1.051 | 9 | -- | -- |
| 141.39 | 0.556 | 7.06 | -0.0769 | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
| 100.73 | 0.469 | 7.08 | -- | 0.858 | -- | -- | -- | 0.308 | 20.3 | -- | -- | -- | -- |
| 114.78 | 0.499 | 7.06 | -- | -- | -0.903 | -- | -- | 0.293 | -- | -1.586 | 9 | -- | -- |
| 141.54 | 0.555 | 7.06 | -- | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.22 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 5 | 77.15 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 6 | 77.38 | humidity | 90 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 10 | 77.81 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 7 |
| 11 | 77.86 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 37 | 78.97 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 39 | 78.99 | radiation | 10 | 10 | > th | dose independent | sin | 23 | NA |
| 40 | 79.15 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 42 | 79.18 | radiation | 10 | 270 | > th | dose independent | rect. | 9 | 3 |
| 44 | 79.25 | radiation | 1 | 10 | > th | dose dependent | sin | 0 | NA |
| 48 | 79.36 | humidity | 50 | 270 | > th | dose dependent | sin | 7 | NA |
| 67 | 79.55 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 73 | 79.65 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 12 |
| 87 | 79.72 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 88 | 79.75 | humidity | 90 | 270 | < th | dose dependent | sin | 7 | NA |
| 91 | 79.78 | radiation | 1 | 10 | > th | dose dependent | rect. | 18 | 22 |
| 112 | 79.98 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 113 | 79.98 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 123 | 80.11 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 124 | 80.11 | radiation | 40 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 170 | 80.32 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 237 | 80.33 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 7 |
| 248 | 80.44 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 7 |
| 251 | 80.44 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 261 | 80.57 | radiation | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 280 | 80.64 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 294 | 80.73 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 316 | 80.84 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 339 | 80.89 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 9 |
| 344 | 80.90 | humidity | 80 | 270 | < th | dose independent | rect. | 24 | 12 |
| 361 | 80.94 | humidity | 80 | 270 | < th | dose independent | rect. | 9 | 3 |
| 363 | 80.94 | humidity | 50 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 365 | 80.95 | humidity | 90 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 370 | 80.98 | humidity | 90 | 270 | < th | dose dependent | rect. | 9 | 3 |
| 394 | 81.05 | radiation | 40 | 10 | < th | dose dependent | no | NA | NA |
| 406 | 81.09 | radiation | 20 | 30 | < th | dose independent | rect. | 21 | 23 |
| 418 | 81.16 | humidity | 70 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 551 | 81.22 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 6 |
| 560 | 81.28 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 589 | 81.38 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 6 |
| 605 | 81.40 | radiation | 40 | 30 | < th | dose independent | rect. | 3 | 23 |
| 623 | 81.48 | humidity | 80 | 270 | < th | dose independent | rect. | 5 | 7 |
| 630 | 81.50 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 698 | 81.65 | temperature | 15 | 270 | > th | dose independent | rect. | 8 | 4 |
| 701 | 81.65 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 702 | 81.65 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 703 | 81.66 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 6 |
| 719 | 81.67 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 13 |
| 720 | 81.67 | humidity | 90 | 270 | < th | dose independent | rect. | 20 | 17 |
| 791 | 81.79 | radiation | 40 | 90 | < th | dose independent | rect. | 12 | 23 |
| 814 | 81.88 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 882 | 81.88 | radiation | 20 | 30 | < th | dose independent | rect. | 12 | 22 |
| 935 | 81.95 | radiation | 40 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 940 | 81.96 | humidity | 90 | 10 | < th | dose dependent | rect. | 11 | 3 |
| 954 | 81.98 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 23 |