BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0616100 Os04g0616100|Os04g0616100
(319 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G56090.1 | chr1:20977989-20979185 REVERSE LENGTH=273 196 1e-50
AT3G25230.2 | chr3:9188257-9191175 FORWARD LENGTH=563 61 7e-10
AT5G48570.1 | chr5:19690746-19693656 REVERSE LENGTH=579 52 5e-07
AT1G58450.1 | chr1:21718014-21718916 FORWARD LENGTH=165 51 8e-07
AT4G30480.2 | chr4:14897500-14898937 FORWARD LENGTH=278 51 9e-07
AT3G16760.1 | chr3:5703213-5705080 FORWARD LENGTH=476 48 8e-06
>AT1G56090.1 | chr1:20977989-20979185 REVERSE LENGTH=273
Length = 272
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/274 (41%), Positives = 150/274 (54%), Gaps = 16/274 (5%)
Query: 2 AGAAVEQAHELYRGGRHRDXXXXXXXXXXXXXXXXXXXXXHSNRAACYLKLHDFHKAAEE 61
A VE+ H+LYR G++++ HSNRAACYLKLHDF KAAEE
Sbjct: 7 ASGKVEKGHQLYRDGKYKEALLFYTEALTAAKAKPQKIALHSNRAACYLKLHDFIKAAEE 66
Query: 62 CTSVLELDREHAGALMLRAQTLVTLKDYQSALFDVNRLIEINPSSEVYRNLHARLKTQLA 121
CT VLELD++H+GALMLRAQTLVTLK+YQSALFDV RL+E+NP SEVY+NL ARL+TQL+
Sbjct: 67 CTCVLELDQKHSGALMLRAQTLVTLKEYQSALFDVTRLMELNPDSEVYQNLEARLRTQLS 126
Query: 122 LAPIPXXXXXXXXXXXDKQELPPERNVNIEICITKSDKPATEMILKKKPTTELIVENK-P 180
LAPIP +Q+ + + +E+ + + E ++ + E E+
Sbjct: 127 LAPIPESEAELEEESDVEQDAEDKESREVELGVNERRDKRFESVVSLRRDLETTGEDAIN 186
Query: 181 ATELILEKKPATELILEKKHATEPPKVEVPPSLPQKPQGWETIAKPKGHSGLDYSKWDKV 240
E++ K P E EVP S Q W+ I KPKGHS LDY++W+ V
Sbjct: 187 KGEVVAPKTP---------EVREQNSKEVPMSGKQS-NAWQAIPKPKGHSTLDYARWNTV 236
Query: 241 XXXXXXXXXXXXXXL-----PQYKFKVRTVAGSP 269
PQY+F+V+TV P
Sbjct: 237 EDDSSEEEDDEDSDDSDESPPQYRFRVKTVGVRP 270
>AT3G25230.2 | chr3:9188257-9191175 FORWARD LENGTH=563
Length = 562
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 44 NRAACYLKLHDFHKAAEECTSVLELDREHAGALMLRAQTLVTLKDYQSALFDVNRLIEIN 103
N AAC LKL D+ +A + CT VLEL+ + AL RAQ + L D A FDV + +EI+
Sbjct: 454 NDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKKALEID 513
Query: 104 PSSEVYRNLHARLKTQL 120
P++ + RLK ++
Sbjct: 514 PNNREVKLEQKRLKEKM 530
>AT5G48570.1 | chr5:19690746-19693656 REVERSE LENGTH=579
Length = 578
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 44 NRAACYLKLHDFHKAAEECTSVLELDREHAGALMLRAQTLVTLKDYQSALFDVNRLIEIN 103
N AAC LKL D+ +AA+ T VLE+D + A+ RA + D A D+ + +EI+
Sbjct: 464 NDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEID 523
Query: 104 PSSEVYRNLHARLKTQL 120
P ++ + + +LK ++
Sbjct: 524 PDNKEVKIEYKKLKEKV 540
>AT1G58450.1 | chr1:21718014-21718916 FORWARD LENGTH=165
Length = 164
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 44 NRAACYLKLHDFHKAAEECTSVLELDREHAGALMLRAQTLVTLKDYQSALFDVNRLIEIN 103
N AAC LKL +F + C+ VL+++ ++ AL RAQ+ + + D SA D+NR +E +
Sbjct: 63 NGAACSLKLKNFLETIVLCSEVLDIEFQNVKALYRRAQSYIEVGDLISAEMDINRALEAD 122
Query: 104 PSSEVYRNLHARLK 117
P + ++L+ +K
Sbjct: 123 PENREVKSLYKAMK 136
>AT4G30480.2 | chr4:14897500-14898937 FORWARD LENGTH=278
Length = 277
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 44 NRAACYLKLHDFHKAAEECTSVLELDREHAGALMLRAQTLVTLKDYQSALFDVNRLIEIN 103
NR C+LKL + +ECT LEL+ + AL+ RA+ L+ ++ A+ D+ +++E++
Sbjct: 151 NRGVCFLKLGKCEETIKECTKALELNPTYNKALVRRAEAHEKLEHFEDAVTDLKKILELD 210
Query: 104 PSSEVYRNLHARLK 117
PS++ R RL+
Sbjct: 211 PSNDQARKGIRRLE 224
>AT3G16760.1 | chr3:5703213-5705080 FORWARD LENGTH=476
Length = 475
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 43 SNRAACYLKLHDFHKAAEECTSVLELDREHAGALMLRAQTLVTLKDYQSALFDVNRLIEI 102
S RA+CY ++ ++ KA +CT VL+ D+++ L+ RA +++ Y+ D+ +++I
Sbjct: 397 STRASCYKEVGEYKKAVADCTKVLDHDKKNVTILVQRALLYESMEKYKLGAEDLRMVLKI 456
Query: 103 NPSSEVYRNLHARLKTQLA 121
+P + + R+ RL T++A
Sbjct: 457 DPGNRIARSTVHRL-TKMA 474
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,136,465
Number of extensions: 236760
Number of successful extensions: 605
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 6
Length of query: 319
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,392,385
Effective search space: 1846324700
Effective search space used: 1846324700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)