Os04g0614700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0614700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.99 | 0.278 | 11.5 | 0.473 | 0.401 | -0.54 | -0.449 | -0.594 | 0.263 | 5.11 | 78 | 1367 | -- | -- |
| 35.31 | 0.277 | 11.5 | 0.519 | 0.393 | -0.568 | -0.487 | -- | 0.269 | 5.09 | 78 | 1369 | -- | -- |
| 35.49 | 0.277 | 11.5 | 0.474 | 0.397 | -0.543 | -- | -0.621 | 0.266 | 5.03 | 77.9 | 1364 | -- | -- |
| 35.87 | 0.279 | 11.5 | 0.527 | 0.396 | -0.587 | -- | -- | 0.278 | 5.08 | 77.91 | 1368 | -- | -- |
| 38.07 | 0.287 | 11.5 | 0.496 | -- | -0.376 | -- | -0.199 | 0.254 | -- | 77.96 | 406 | -- | -- |
| 39.57 | 0.295 | 11.5 | 0.487 | 0.364 | -- | -0.557 | -- | 0.246 | 5.23 | -- | -- | -- | -- |
| 40.35 | 0.297 | 11.5 | 0.487 | 0.36 | -- | -- | -- | 0.249 | 5.21 | -- | -- | -- | -- |
| 37.95 | 0.287 | 11.5 | 0.515 | -- | -0.381 | -- | -- | 0.262 | -- | 78 | 406 | -- | -- |
| 42.02 | 0.302 | 11.5 | -- | 0.254 | -0.613 | -- | -- | 0.233 | 5.37 | 80 | 1772 | -- | -- |
| 47.14 | 0.321 | 11.5 | 0.499 | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
| 46.6 | 0.319 | 11.5 | -- | 0.369 | -- | -- | -- | 0.195 | 5.16 | -- | -- | -- | -- |
| 44.61 | 0.311 | 11.5 | -- | -- | -0.776 | -- | -- | 0.242 | -- | 80.52 | 1834 | -- | -- |
| 53.72 | 0.342 | 11.5 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.54 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 19 |
| 3 | 33.54 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 4 | 33.55 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 15 |
| 5 | 33.55 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 17 |
| 6 | 33.56 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 13 |
| 13 | 33.78 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 15 | 33.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 16 |
| 18 | 33.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 19 | 33.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 14 |
| 29 | 33.86 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 4 |
| 96 | 34.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 102 | 34.36 | radiation | 40 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 103 | 34.37 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 130 | 34.43 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 7 |
| 136 | 34.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 143 | 34.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 6 |
| 160 | 34.61 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 161 | 34.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 211 | 34.74 | temperature | 25 | 10 | > th | dose dependent | sin | 19 | NA |
| 213 | 34.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 4 |
| 215 | 34.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 12 |
| 222 | 34.79 | radiation | 40 | 1440 | > th | dose dependent | sin | 11 | NA |
| 249 | 34.85 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 274 | 34.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 289 | 34.92 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 301 | 34.95 | radiation | 20 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 325 | 35.00 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 336 | 35.01 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 343 | 35.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 377 | 35.07 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 3 |
| 408 | 35.10 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 409 | 35.10 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 6 |
| 472 | 35.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 482 | 35.17 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 485 | 35.18 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 487 | 35.18 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 522 | 35.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 606 | 35.27 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 633 | 35.29 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 642 | 35.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 646 | 35.30 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 654 | 35.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 678 | 35.33 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 679 | 35.33 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 720 | 35.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 735 | 35.37 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 737 | 35.37 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 761 | 35.38 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 763 | 35.38 | humidity | 60 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 774 | 35.39 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 11 |
| 789 | 35.40 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 803 | 35.40 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 21 |
| 808 | 35.41 | humidity | 70 | 1440 | > th | dose dependent | sin | 23 | NA |
| 816 | 35.42 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 846 | 35.43 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 856 | 35.44 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 11 |
| 880 | 35.45 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 15 | 1 |
| 893 | 35.45 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 16 |
| 909 | 35.46 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 927 | 35.46 | humidity | 80 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 932 | 35.46 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 940 | 35.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 966 | 35.48 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 13 |
| 971 | 35.48 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 991 | 35.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 11 |