BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0614700 Os04g0614700|AK058602
         (166 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32240.1  | chr2:13684614-13689330 REVERSE LENGTH=1334          49   1e-06

>AT2G32240.1 | chr2:13684614-13689330 REVERSE LENGTH=1334
          Length = 1333

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 17/102 (16%)

Query: 80   EMEKKIEHLEQKLQAKDS---------VESTSRDFSLDSSTLPSKQRDRSLAPEXXXXXX 130
            E E  ++ LEQK+Q  D+         V   SRD  L  S+ P+K++ +   PE      
Sbjct: 1234 EFESMVKDLEQKVQLADAKTKETEAMDVGVKSRDIDLSFSS-PTKRKSKK-KPEASLSSS 1291

Query: 131  XXXXELREP------SGIMAFKFILGVALLSVLIGVFLGKRY 166
                 +  P      S +M  K + GVAL+SV+IG+ LG++Y
Sbjct: 1292 SSSGNVTTPTQTASTSHLMTVKIVTGVALISVIIGIILGRKY 1333



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.125    0.315 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,647,745
Number of extensions: 86268
Number of successful extensions: 1027
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 108 (46.2 bits)