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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0610800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Coproporphyrinogen III oxidase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.8 (0.0237) R2 : 0.83
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.03 (0.0665) R2dC : 0.909 R2C : 0.498
β3 : 1.69 (0.0615) R2dE : 0.329 R2E : -0.0838
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0715 (0.05) R2dN8 : 0.000995 R2N8 : -0.00149
σ : 0.445
deviance : 91.18
__
_____
C
peak time of C : 19
E
wheather : radiation
threshold : 2.974
memory length : 75
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 1.03
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.27 0.444 13.8 -0.261 3.04 1.67 0.15 -0.245 -0.102 19.1 2.953 75 0.611 --
89.32 0.44 13.8 -0.27 3.03 1.67 0.219 -- -0.105 19.1 2.95 75 0.937 --
89.23 0.44 13.8 -0.269 3.02 1.67 -- -0.268 -0.106 19.1 2.96 75 0.934 --
89.44 0.44 13.8 -0.257 3.03 1.68 -- -- -0.101 19 2.975 75 1.01 --
150.42 0.571 13.7 -0.2 -- 2.43 -- -0.049 -0.214 -- 36.93 12 9.04 --
129.12 0.533 13.8 -0.229 2.64 -- -0.113 -- -0.224 21 -- -- -- --
129.17 0.532 13.8 -0.225 2.64 -- -- -- -0.224 21 -- -- -- --
129.17 0.529 13.7 -0.225 -- 2.64 -- -- -0.224 -- 77.6 8 9.02 --
91.18 0.445 13.8 -- 3.03 1.69 -- -- -0.0715 19 2.974 75 1.03 --
529.82 1.08 13.7 -0.22 -- -- -- -- -0.24 -- -- -- -- --
130.5 0.534 13.8 -- 2.64 -- -- -- -0.199 21 -- -- -- --
130.5 0.532 13.7 -- -- 2.64 -- -- -0.199 -- 118.5 6 9.01 --
531.1 1.08 13.7 -- -- -- -- -- -0.215 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.08 temperature 10.0 270 > th dose dependent rect. 23 16
4 90.92 temperature 30.0 90 < th dose independent rect. 5 8
6 91.35 temperature 30.0 270 < th dose independent rect. 3 8
8 91.52 radiation 1.0 90 < th dose independent sin 6 NA
9 91.53 radiation 1.0 90 > th dose independent sin 6 NA
13 92.02 radiation 40.0 270 < th dose independent rect. 3 22
15 92.08 radiation 10.0 30 < th dose dependent sin 6 NA
18 92.46 temperature 10.0 270 > th dose dependent rect. 8 9
20 92.64 temperature 30.0 10 < th dose independent rect. 6 6
24 92.75 temperature 30.0 270 < th dose dependent rect. 4 9
27 93.07 temperature 20.0 270 > th dose dependent rect. 8 8
30 93.16 radiation 40.0 270 < th dose independent rect. 3 8
35 93.31 temperature 30.0 270 < th dose dependent rect. 4 17
37 93.40 temperature 30.0 10 < th dose independent rect. 6 8
51 93.88 atmosphere 995.0 10 > th dose dependent rect. 6 17
58 94.11 temperature 10.0 270 > th dose dependent rect. 9 19
79 94.87 temperature 25.0 270 > th dose independent rect. 8 8
148 96.75 atmosphere 995.0 10 > th dose dependent rect. 6 6
186 97.61 radiation 1.0 90 < th dose independent rect. 23 9
194 97.65 wind 9.0 10 < th dose dependent rect. 6 6
199 97.71 radiation 1.0 90 < th dose independent rect. 23 12
202 97.79 temperature 10.0 90 > th dose dependent rect. 11 18
207 97.93 radiation 40.0 270 < th dose dependent rect. 4 7
214 98.09 temperature 30.0 90 < th dose independent rect. 6 17
218 98.18 atmosphere 1000.0 10 > th dose independent rect. 6 18
219 98.21 radiation 40.0 270 < th dose dependent rect. 4 19
224 98.32 temperature 10.0 10 > th dose dependent rect. 10 20
226 98.34 radiation 1.0 90 < th dose independent rect. 23 16
235 98.45 temperature 25.0 270 < th dose independent rect. 4 18
244 98.66 temperature 30.0 10 < th dose independent rect. 6 18
246 98.69 radiation 1.0 90 > th dose independent rect. 4 8
263 98.77 radiation 10.0 90 < th dose dependent rect. 23 11
265 98.80 wind 7.0 10 < th dose independent rect. 6 6
272 98.86 wind 9.0 10 < th dose independent rect. 12 18
276 98.89 temperature 30.0 270 < th dose dependent sin 1 NA
317 99.19 atmosphere 995.0 10 > th dose dependent rect. 6 8
346 99.42 humidity 90.0 10 < th dose independent rect. 6 6
349 99.44 humidity 50.0 90 > th dose dependent rect. 23 7
354 99.49 radiation 40.0 270 < th dose dependent rect. 3 21
357 99.56 radiation 1.0 90 < th dose independent rect. 1 7
363 99.63 radiation 1.0 90 < th dose independent rect. 1 10
370 99.67 temperature 20.0 10 > th dose independent rect. 6 6
383 99.75 precipitation 0.1 10 < th dose independent rect. 6 6
385 99.75 precipitation 0.1 10 < th dose dependent rect. 6 6
387 99.77 radiation 10.0 90 < th dose dependent rect. 23 7
391 99.79 temperature 10.0 10 > th dose independent rect. 6 6
393 99.79 atmosphere 995.0 10 > th dose independent rect. 6 6
394 99.79 atmosphere 1015.0 10 < th dose independent rect. 6 6
395 99.79 temperature 10.0 10 > th dose independent rect. 12 18
399 99.80 wind 9.0 270 < th dose independent rect. 11 16
410 99.90 wind 9.0 270 < th dose independent rect. 10 18
418 99.95 humidity 60.0 10 > th dose dependent rect. 24 6
424 99.98 radiation 1.0 90 < th dose independent rect. 1 14
454 100.15 precipitation 0.1 270 < th dose independent rect. 3 8
456 100.15 precipitation 0.1 270 < th dose dependent rect. 3 8
464 100.18 radiation 1.0 10 > th dose independent rect. 6 6
479 100.27 radiation 1.0 90 < th dose dependent rect. 23 16
496 100.35 wind 9.0 270 < th dose independent rect. 22 6
497 100.36 temperature 10.0 270 > th dose independent rect. 22 6
498 100.36 temperature 30.0 270 < th dose independent rect. 22 6
499 100.36 humidity 50.0 270 > th dose independent rect. 22 6
502 100.36 atmosphere 995.0 270 > th dose independent rect. 22 6
508 100.36 temperature 10.0 270 > th dose independent rect. 4 18
509 100.36 temperature 25.0 270 > th dose dependent sin 4 NA
517 100.37 atmosphere 1015.0 10 < th dose dependent rect. 10 20
522 100.42 temperature 15.0 270 > th dose independent rect. 3 8
529 100.45 radiation 1.0 90 < th dose dependent rect. 1 7
532 100.48 precipitation 0.1 270 < th dose independent rect. 4 6
533 100.48 precipitation 0.1 270 < th dose dependent rect. 4 6
535 100.50 temperature 15.0 270 > th dose independent rect. 4 6
539 100.52 radiation 1.0 90 < th dose dependent rect. 1 10
550 100.53 atmosphere 995.0 270 > th dose independent rect. 4 18
562 100.57 humidity 50.0 270 > th dose dependent rect. 23 4
577 100.67 wind 7.0 270 < th dose independent rect. 4 6
595 100.76 atmosphere 995.0 270 > th dose independent rect. 4 6
597 100.76 atmosphere 1015.0 270 < th dose independent rect. 4 6
598 100.76 temperature 10.0 270 > th dose independent rect. 10 18
602 100.79 precipitation 0.1 270 < th dose independent rect. 22 6
604 100.79 precipitation 0.1 270 < th dose dependent rect. 22 6
606 100.80 wind 9.0 270 < th dose independent rect. 3 8
619 100.84 atmosphere 995.0 270 > th dose independent rect. 3 8
620 100.84 atmosphere 1015.0 270 < th dose independent rect. 3 8
621 100.84 temperature 10.0 270 > th dose independent rect. 11 16
626 100.86 radiation 1.0 90 < th dose dependent rect. 1 14
629 100.87 temperature 10.0 10 > th dose dependent rect. 12 18
660 100.99 precipitation 0.1 270 < th dose independent rect. 4 18
661 100.99 precipitation 0.1 270 < th dose dependent rect. 4 18
684 101.05 humidity 50.0 270 > th dose independent rect. 4 6
686 101.05 wind 9.0 270 < th dose dependent rect. 22 6
692 101.09 wind 9.0 270 < th dose independent rect. 23 16
699 101.12 precipitation 0.1 270 < th dose independent rect. 11 16
702 101.12 precipitation 0.1 270 < th dose dependent rect. 11 16
707 101.15 precipitation 0.1 10 < th dose independent rect. 12 18
710 101.15 precipitation 0.1 10 < th dose dependent rect. 12 18
725 101.22 wind 1.0 270 > th dose independent rect. 9 8
728 101.23 precipitation 0.1 270 < th dose independent rect. 10 18
730 101.23 precipitation 0.1 270 < th dose dependent rect. 10 18
763 101.40 radiation 30.0 10 < th dose dependent rect. 24 6
785 101.47 temperature 10.0 90 > th dose independent rect. 6 17
802 101.49 temperature 10.0 270 > th dose independent rect. 15 8
803 101.49 temperature 10.0 270 > th dose independent rect. 23 16
819 101.57 radiation 40.0 270 < th dose independent rect. 15 8
821 101.57 temperature 15.0 10 > th dose independent rect. 6 18
833 101.61 radiation 30.0 10 < th dose independent rect. 6 20
840 101.63 temperature 10.0 1440 > th dose independent rect. 7 6
843 101.63 atmosphere 995.0 1440 > th dose independent rect. 7 6
844 101.63 temperature 10.0 1440 > th dose independent rect. 13 18
847 101.64 atmosphere 1015.0 270 < th dose independent rect. 23 5
848 101.64 wind 9.0 10 < th dose dependent rect. 24 6
860 101.69 wind 9.0 10 < th dose independent rect. 24 6
861 101.69 temperature 10.0 10 > th dose independent rect. 24 6
862 101.69 temperature 30.0 10 < th dose independent rect. 24 6
863 101.69 humidity 50.0 10 > th dose independent rect. 24 6
866 101.69 atmosphere 995.0 10 > th dose independent rect. 24 6
867 101.69 radiation 20.0 10 < th dose independent rect. 24 6
880 101.73 atmosphere 995.0 270 > th dose independent rect. 15 8
897 101.80 atmosphere 1015.0 270 < th dose independent rect. 4 18
906 101.83 atmosphere 1015.0 10 < th dose independent rect. 24 6
921 101.86 wind 9.0 270 < th dose independent rect. 4 18
937 101.92 wind 9.0 270 < th dose dependent rect. 23 4
959 101.98 atmosphere 995.0 270 > th dose independent rect. 17 16
970 101.99 atmosphere 1015.0 270 < th dose independent rect. 23 16
976 102.01 atmosphere 1015.0 90 < th dose dependent rect. 11 18
994 102.07 humidity 50.0 270 > th dose independent rect. 23 16
995 102.08 precipitation 0.1 10 < th dose independent rect. 6 18
1000 102.08 precipitation 0.1 10 < th dose dependent rect. 6 18