BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0610800 Os04g0610800|AK070391
(310 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03475.1 | chr1:869302-871175 REVERSE LENGTH=387 538 e-153
AT4G03205.2 | chr4:1412814-1413703 FORWARD LENGTH=241 234 3e-62
>AT1G03475.1 | chr1:869302-871175 REVERSE LENGTH=387
Length = 386
Score = 538 bits (1385), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/308 (83%), Positives = 273/308 (88%), Gaps = 8/308 (2%)
Query: 1 MIRRVQGEVCAALEEADGSGARFVEDVWSRPGGGGGISRVLQDGRVFEKAGVNVSVVYGV 60
MIR Q VC A+E +G G +F EDVWSRPGGGGGISRVLQDG VFEKAGVNVSVVYGV
Sbjct: 87 MIRAAQDSVCDAIEAIEG-GPKFKEDVWSRPGGGGGISRVLQDGNVFEKAGVNVSVVYGV 145
Query: 61 MPPDAYRXXXXXXXXXXXXXXXPKAGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDA 120
MPP+AYR K GPVPFFAAG+SSVLHPKNPFAPTLHFNYRYFETDA
Sbjct: 146 MPPEAYRAAKGSASDQ-------KPGPVPFFAAGVSSVLHPKNPFAPTLHFNYRYFETDA 198
Query: 121 PKDAPGAPRQWWFGGGTDLTPSYIIEEDVKHFHSVQKQACDKFDPSFYPRFKKWCDDYFY 180
PKD PGAPRQWWFGGGTD TP+YI EEDVKHFHS+QKQACDKFDPSFYPRFKKWCDDYFY
Sbjct: 199 PKDVPGAPRQWWFGGGTDFTPAYIFEEDVKHFHSIQKQACDKFDPSFYPRFKKWCDDYFY 258
Query: 181 IKHRNERRGLGGIFFDDLNDYDQEMLLNFATECADSVVPAYIPIIERRKDTPFTEEHKAW 240
IKHR+ERRGLGGIFFDDLNDYDQEMLL+FATECA+SVVPAYIPI+E+RKD FTE+HKAW
Sbjct: 259 IKHRDERRGLGGIFFDDLNDYDQEMLLSFATECANSVVPAYIPIVEKRKDMEFTEQHKAW 318
Query: 241 QQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWQYDHTPEEGTEERKLLDA 300
QQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPL+ARW+YDH PEEGTEE KLLDA
Sbjct: 319 QQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLSARWEYDHKPEEGTEEWKLLDA 378
Query: 301 CINPKEWL 308
CINPKEW+
Sbjct: 379 CINPKEWI 386
>AT4G03205.2 | chr4:1412814-1413703 FORWARD LENGTH=241
Length = 240
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/157 (71%), Positives = 124/157 (78%), Gaps = 8/157 (5%)
Query: 1 MIRRVQGEVCAALEEADGSGARFVEDVWSRPGGGGGISRVLQDGRVFEKAGVNVSVVYGV 60
MIR Q +VC A+E + G +F EDVWSRPGGGGGISR+LQDG V+EKAGVNVSV+YGV
Sbjct: 87 MIRTAQDKVCEAIEAVE-EGPKFKEDVWSRPGGGGGISRILQDGNVWEKAGVNVSVIYGV 145
Query: 61 MPPDAYRXXXXXXXXXXXXXXXPKAGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDA 120
MPP+AYR K GP+PFFAAG SSVLHP+NPFAPTLHFNYRYFETDA
Sbjct: 146 MPPEAYRAAKAATSEQ-------KPGPIPFFAAGTSSVLHPQNPFAPTLHFNYRYFETDA 198
Query: 121 PKDAPGAPRQWWFGGGTDLTPSYIIEEDVKHFHSVQK 157
PKD PGAPRQWWFGGGTD TP+YI EEDVKHFHSV K
Sbjct: 199 PKDVPGAPRQWWFGGGTDFTPAYIFEEDVKHFHSVVK 235
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.141 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,660,152
Number of extensions: 346448
Number of successful extensions: 541
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 212
Effective length of database: 8,419,801
Effective search space: 1784997812
Effective search space used: 1784997812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)