Os04g0609200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Major facilitator superfamily protein.
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Os04g0609200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Major facilitator superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.78 | 0.345 | 9.36 | 0.506 | 0.444 | -1.06 | 0.283 | 7.55 | 0.209 | 23.9 | 31.3 | 8 | -- | -- |
| 56.58 | 0.35 | 9.39 | 0.142 | 0.373 | -0.301 | 0.246 | -- | 0.263 | 23 | 28.7 | 10 | -- | -- |
| 54.1 | 0.345 | 9.36 | 0.484 | 0.442 | -1.06 | -- | 7.61 | 0.208 | 23.8 | 31.3 | 8 | -- | -- |
| 55.94 | 0.348 | 9.39 | 0.17 | 0.376 | -0.332 | -- | -- | 0.256 | 22.5 | 28.4 | 56 | -- | -- |
| 66.07 | 0.379 | 9.35 | 0.525 | -- | -1.21 | -- | 7.7 | 0.205 | -- | 31.28 | 7 | -- | -- |
| 61.26 | 0.367 | 9.39 | 0.0825 | 0.485 | -- | 0.296 | -- | 0.232 | 0.175 | -- | -- | -- | -- |
| 61.63 | 0.368 | 9.39 | 0.0713 | 0.484 | -- | -- | -- | 0.231 | 0.0567 | -- | -- | -- | -- |
| 63.26 | 0.37 | 9.37 | 0.184 | -- | -0.383 | -- | -- | 0.295 | -- | 27.1 | 15 | -- | -- |
| 56.52 | 0.35 | 9.39 | -- | 0.374 | -0.318 | -- | -- | 0.254 | 22.5 | 28.29 | 69 | -- | -- |
| 76.4 | 0.408 | 9.38 | 0.0865 | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
| 61.76 | 0.368 | 9.39 | -- | 0.485 | -- | -- | -- | 0.223 | 0.0649 | -- | -- | -- | -- |
| 64.15 | 0.373 | 9.37 | -- | -- | -0.369 | -- | -- | 0.274 | -- | 27.06 | 15 | -- | -- |
| 76.6 | 0.409 | 9.38 | -- | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.54 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 2 | 51.71 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 28 | 52.31 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 36 | 52.53 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 41 | 52.58 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 60 | 52.90 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 74 | 53.02 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 8 |
| 79 | 53.05 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 114 | 53.30 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 130 | 53.40 | temperature | 30.0 | 90 | > th | dose independent | rect. | 11 | 1 |
| 147 | 53.51 | temperature | 30.0 | 10 | > th | dose independent | rect. | 10 | 2 |
| 184 | 53.69 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 4 |
| 205 | 53.79 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 11 | 2 |
| 209 | 53.80 | temperature | 20.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 456 | 54.20 | temperature | 30.0 | 30 | > th | dose independent | sin | 5 | NA |
| 520 | 54.32 | temperature | 30.0 | 30 | < th | dose dependent | sin | 0 | NA |
| 570 | 54.44 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 628 | 54.57 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 18 |
| 630 | 54.57 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 649 | 54.61 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 660 | 54.63 | temperature | 30.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 751 | 54.75 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 799 | 54.82 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 809 | 54.84 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 820 | 54.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 830 | 54.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 19 |
| 840 | 54.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 846 | 54.89 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 872 | 54.91 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 875 | 54.91 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 904 | 54.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 911 | 54.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 926 | 54.98 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 970 | 55.03 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 9 |
| 979 | 55.04 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 992 | 55.05 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 15 |