BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0609200 Os04g0609200|AK103652
         (102 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13050.1  | chr3:4176866-4178868 FORWARD LENGTH=501            128   6e-31

>AT3G13050.1 | chr3:4176866-4178868 FORWARD LENGTH=501
          Length = 500

 Score =  128 bits (321), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 77/89 (86%)

Query: 4  DQSATYSVDDALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQE 63
          D +  ++VD+AL++ GFG++QI +L+YAG+G +AEAMEMMLLSFVGP+VQ  W L++ QE
Sbjct: 3  DGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQE 62

Query: 64 SMITSIVFVGMLIGAYTWGVVSDNYGRRQ 92
          S+ITS+VF GMLIGAY+WG+VSD +GRR+
Sbjct: 63 SLITSVVFAGMLIGAYSWGIVSDKHGRRK 91



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,989,118
Number of extensions: 63279
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 11,106,569
Length adjustment: 72
Effective length of query: 30
Effective length of database: 9,132,617
Effective search space: 273978510
Effective search space used: 273978510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)