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Os04g0608100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Galactokinase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0456) R2 : 0.671
β1 : -2.22 (0.18) R2dD : 0.139 R2D : 0.0397
β2 : 2.52 (0.108) R2dC : 0.406 R2C : 0.47
β3 : 2.3 (0.188) R2dE : 0.146 R2E : 0.129
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0987 (0.103) R2dN8 : 0.00107 R2N8 : 0.0102
σ : 0.837
deviance : 323.19
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C
peak time of C : 23.7
E
wheather : temperature
threshold : 11.99
memory length : 2656
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
307.8 0.824 10.5 -1.7 2.5 2.38 1.76 1.65 0.212 0.0227 10.07 2143 -- --
307.66 0.817 10.5 -2.13 2.55 2.28 1.93 -- 0.116 23.7 9.643 2668 -- --
320.14 0.833 10.5 -1.79 2.48 2.31 -- 1.75 0.204 23.7 8.165 2589 -- --
323.19 0.837 10.5 -2.22 2.52 2.3 -- -- 0.0987 23.7 11.99 2656 -- --
616.35 1.16 10.4 -1.31 -- 3.48 -- 3.25 0.154 -- 17.21 920 -- --
412.9 0.953 10.4 -1.24 2.73 -- 1.96 -- 0.577 23.8 -- -- -- --
429.62 0.971 10.4 -1.32 2.72 -- -- -- 0.568 23.9 -- -- -- --
618.98 1.16 10.5 -2.35 -- 3.53 -- -- -0.0468 -- 17.97 918 -- --
429.12 0.965 10.4 -- 2.64 1.52 -- -- 0.485 24 12.73 1876 -- --
896.48 1.4 10.4 -1.24 -- -- -- -- 0.603 -- -- -- -- --
475.49 1.02 10.4 -- 2.71 -- -- -- 0.715 23.8 -- -- -- --
739.81 1.27 10.4 -- -- 2.57 -- -- 0.343 -- 21.3 921 -- --
936.87 1.43 10.3 -- -- -- -- -- 0.741 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 294.65 wind 7.0 43200 < th dose independent rect. 8 2
2 295.12 wind 7.0 43200 < th dose independent rect. 5 5
4 296.39 wind 7.0 43200 > th dose independent rect. 8 2
6 297.15 radiation 1.0 14400 < th dose independent rect. 21 9
7 297.17 radiation 1.0 14400 < th dose independent rect. 23 7
16 297.53 wind 7.0 43200 > th dose independent rect. 5 5
18 297.56 radiation 1.0 14400 > th dose independent rect. 4 2
28 298.69 radiation 40.0 4320 < th dose dependent rect. 17 1
32 298.82 precipitation 0.1 43200 < th dose independent rect. 22 12
33 298.82 precipitation 0.1 43200 < th dose dependent rect. 22 12
34 298.83 precipitation 0.1 43200 > th dose independent rect. 22 12
40 299.02 precipitation 0.1 43200 < th dose independent rect. 20 12
41 299.02 precipitation 0.1 43200 < th dose dependent rect. 20 12
42 299.03 precipitation 0.1 43200 > th dose independent rect. 20 12
65 299.52 precipitation 0.1 43200 > th dose dependent rect. 20 12
69 299.82 precipitation 0.1 43200 < th dose independent rect. 2 11
70 299.82 precipitation 0.1 43200 < th dose dependent rect. 2 11
72 299.91 precipitation 0.1 43200 > th dose dependent rect. 22 13
76 299.95 precipitation 0.1 43200 > th dose independent rect. 2 11
77 299.96 temperature 20.0 1440 > th dose dependent rect. 6 1
79 300.06 precipitation 0.1 43200 < th dose independent sin 7 NA
80 300.06 precipitation 0.1 43200 < th dose dependent sin 7 NA
81 300.10 precipitation 0.1 43200 > th dose independent sin 7 NA
82 300.13 temperature 20.0 1440 > th dose dependent rect. 1 7
83 300.14 precipitation 0.1 43200 > th dose independent rect. 22 9
84 300.18 precipitation 0.1 43200 < th dose independent rect. 6 3
85 300.18 precipitation 0.1 43200 < th dose dependent rect. 6 3
89 300.30 precipitation 0.1 43200 < th dose independent rect. 22 9
91 300.30 precipitation 0.1 43200 < th dose dependent rect. 22 9
101 300.51 precipitation 0.1 43200 < th dose independent rect. 6 5
102 300.51 precipitation 0.1 43200 < th dose dependent rect. 6 5
134 300.89 precipitation 0.1 43200 > th dose dependent rect. 2 11
142 300.97 precipitation 0.1 43200 > th dose independent rect. 6 5
145 300.99 precipitation 0.1 43200 > th dose dependent rect. 6 5
154 301.08 precipitation 0.1 43200 > th dose independent rect. 6 3
155 301.08 radiation 1.0 4320 > th dose dependent rect. 17 1
156 301.13 precipitation 0.1 43200 > th dose dependent rect. 6 3
157 301.13 temperature 20.0 1440 > th dose dependent rect. 21 11
163 301.23 wind 1.0 14400 > th dose independent rect. 21 2
164 301.23 precipitation 0.1 43200 > th dose dependent sin 7 NA
208 301.78 precipitation 0.1 43200 > th dose dependent rect. 22 9
214 301.87 radiation 20.0 4320 < th dose dependent rect. 17 11
236 302.00 wind 5.0 43200 > th dose dependent rect. 8 4
269 302.32 temperature 10.0 1440 > th dose dependent rect. 5 2
276 302.36 radiation 20.0 4320 < th dose dependent rect. 17 5
295 302.49 temperature 30.0 1440 < th dose dependent rect. 2 6
302 302.57 temperature 15.0 4320 > th dose dependent rect. 3 1
316 302.70 precipitation 0.1 43200 > th dose dependent rect. 4 9
354 302.93 temperature 20.0 1440 > th dose dependent sin 11 NA
382 303.13 temperature 30.0 1440 < th dose dependent rect. 5 2
400 303.25 precipitation 0.1 43200 > th dose independent rect. 24 7
404 303.26 temperature 30.0 1440 < th dose dependent rect. 21 11
407 303.29 precipitation 0.1 43200 > th dose independent rect. 5 7
411 303.34 precipitation 0.1 43200 < th dose independent rect. 24 7
413 303.34 precipitation 0.1 43200 < th dose dependent rect. 24 7
445 303.52 temperature 30.0 1440 < th dose dependent rect. 19 13
479 303.65 wind 5.0 43200 > th dose dependent rect. 20 16
506 303.80 wind 5.0 43200 > th dose dependent sin 6 NA
566 304.20 wind 5.0 43200 > th dose dependent rect. 24 12
586 304.33 wind 5.0 43200 > th dose dependent rect. 23 15
602 304.43 wind 7.0 43200 < th dose independent rect. 20 16
609 304.47 temperature 30.0 4320 < th dose dependent rect. 3 1
637 304.55 radiation 10.0 1440 < th dose independent rect. 16 1
667 304.72 wind 7.0 43200 > th dose independent rect. 20 16
693 304.91 temperature 15.0 4320 > th dose dependent rect. 22 6
707 304.96 radiation 10.0 1440 < th dose independent rect. 16 3
713 304.99 precipitation 0.1 43200 > th dose dependent rect. 24 7
714 305.02 precipitation 0.1 43200 < th dose independent rect. 17 15
717 305.02 precipitation 0.1 43200 < th dose dependent rect. 17 15
736 305.11 radiation 10.0 1440 < th dose independent rect. 16 12
747 305.16 temperature 30.0 1440 < th dose dependent sin 10 NA
753 305.17 precipitation 0.1 43200 > th dose independent rect. 17 15
811 305.47 radiation 10.0 1440 < th dose independent rect. 16 6
832 305.58 wind 3.0 43200 > th dose dependent rect. 10 1
848 305.66 radiation 10.0 4320 > th dose dependent rect. 16 15
864 305.72 wind 5.0 43200 > th dose independent rect. 23 15
882 305.77 temperature 20.0 43200 > th dose independent rect. 19 1
952 306.07 temperature 20.0 43200 > th dose independent rect. 16 5
979 306.18 wind 5.0 43200 < th dose independent rect. 22 16