BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0608100 Os04g0608100|AK072315
(430 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10700.1 | chr3:3346789-3350863 REVERSE LENGTH=425 457 e-129
AT3G06580.1 | chr3:2049141-2051867 REVERSE LENGTH=497 53 3e-07
>AT3G10700.1 | chr3:3346789-3350863 REVERSE LENGTH=425
Length = 424
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/430 (55%), Positives = 289/430 (67%), Gaps = 20/430 (4%)
Query: 13 SWPSEGELDVVRAKVVEISGRGAGEVRVVACPYRICPLGAHIDHQGGTVTAMTINYGVLL 72
SWP++ EL+ ++ V ++SGR GEVRVV PYRICPLGAHIDHQGGTV+AMTIN G+LL
Sbjct: 2 SWPTDSELNSIKEAVAQMSGRDKGEVRVVVAPYRICPLGAHIDHQGGTVSAMTINKGILL 61
Query: 73 GFVASDDAEISLQSGQFEGVIRFRVDDLQKPI------------ENPENINWESYARGAV 120
GFV S D ++ L+S QFEG + FRVD++Q PI + E W +YARGAV
Sbjct: 62 GFVPSGDTQVQLRSAQFEGEVCFRVDEIQHPIGLANKNGASTPSPSKEKSIWGTYARGAV 121
Query: 121 YALQNFGYDLKKGIIGYIXXXXXXXXXXXXXXXXXXIAYLMALENVNDLVVSPVDNIQLD 180
YALQ+ +LK+GIIGY+ +AYL+ALEN N+L VSP +NI+ D
Sbjct: 122 YALQSSKKNLKQGIIGYLSGSNGLDSSGLSSSAAVGVAYLLALENANELTVSPTENIEYD 181
Query: 181 KSIENKYLGLENGILDPSAILLSRYGYLTFMDCKTATHSYVYFSVLSKSQQCQGELPFKI 240
+ IEN YLGL NGILD SAILLS YG LT+MDCKT H V Q + E PF+I
Sbjct: 182 RLIENGYLGLRNGILDQSAILLSNYGCLTYMDCKTLDHELV--------QAPELEKPFRI 233
Query: 241 LLAFSGLQHNLPKKSGYNTRVFECKEAARALLCASGCEDASSILRNVNPAIYEAQKCILE 300
LLAFSGL+ L GYN RV EC+EAA+ LL ASG + L NV A+YEA K L+
Sbjct: 234 LLAFSGLRQALTTNPGYNLRVSECQEAAKVLLTASGNSELEPTLCNVEHAVYEAHKHELK 293
Query: 301 ENLARRAEHYFSEMKRVVKGRDAWARGDLREFGQLISASGRSSILNYECGSKEMIQLYEI 360
LA+RAEHYFSE RV+KGR+AWA G+L EFG+LISASG SSI NYECG++ +IQLY+I
Sbjct: 294 PVLAKRAEHYFSENMRVIKGREAWASGNLEEFGKLISASGLSSIENYECGAEPLIQLYKI 353
Query: 361 LLKAPGVLGARFSGAGFRGCCLAVVESGHXXXXXXXXXXXXXXXQPELVSKIPPGRRVLV 420
LLKAPGV GARFSGAGFRGCCLA V++ QPE + + G+ VL+
Sbjct: 354 LLKAPGVYGARFSGAGFRGCCLAFVDAEKAEAAASYVKDEYEKAQPEFANNLNGGKPVLI 413
Query: 421 CEPGDGARVI 430
CE GD ARV+
Sbjct: 414 CEAGDAARVL 423
>AT3G06580.1 | chr3:2049141-2051867 REVERSE LENGTH=497
Length = 496
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 303 LARRAEHYFSEMKRVVKGRDAWARG-----DLREFGQLISASGRSSILNYECGSKEMIQL 357
L +RA H +SE +RV +D L++ G L++ S S + YEC E+ +L
Sbjct: 361 LHQRAAHVYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMNESHYSCSVLYECSCPELEEL 420
Query: 358 YEILLKAPGVLGARFSGAGFRGCCLAVVE 386
++ K G LGAR +GAG+ GC +A+V+
Sbjct: 421 VQVC-KENGALGARLTGAGWGGCAVALVK 448
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,471,766
Number of extensions: 327413
Number of successful extensions: 622
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 2
Length of query: 430
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 329
Effective length of database: 8,337,553
Effective search space: 2743054937
Effective search space used: 2743054937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)