FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0602200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bacterial extracellular solute-binding protein, family 1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.479) R2 : -215
β1 : 1.38 (1.79) R2dD : 1.65 R2D : -0.865
β2 : 1.03 (1.28) R2dC : 4.42 R2C : -0.178
β3 : -17.2 (1.61) R2dE : -76.1 R2E : -72.1
β4 : -0.482 (5.41) R2dD*C : -0.804 R2D*C : -0.53
β5 : -83.3 (5.61) R2dD*E : -147 R2D*E : -140
γ1 : -0.248 (1.03) R2dN8 : 0.409 R2N8 : -0.352
σ : 0.422
deviance : 80.62
__
_____
C
peak time of C : 21.3
E
wheather : wind
threshold : 4
memory length : 7
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.62 0.422 10.9 1.38 1.03 -17.2 -0.482 -83.3 -0.248 21.3 4 7 23 1
106.82 0.485 10.6 -0.19 0.875 0.167 -0.456 -- -0.349 20.9 4 7 23 1
106.88 0.485 10.6 -0.15 0.879 0.167 -- -0.432 -0.343 21 4 7 23 1
102.22 0.474 10.6 -0.168 0.847 0.387 -- -- -0.33 19.9 4.324 13 23.7 4.45
138.77 0.549 10.5 -0.0981 -- 0.545 -- -0.247 -0.304 -- 25.13 2 23.6 3.37
107.65 0.486 10.6 -0.188 0.92 -- -0.406 -- -0.37 21.1 -- -- -- --
108.23 0.487 10.6 -0.174 0.921 -- -- -- -0.37 21.1 -- -- -- --
138.29 0.548 10.5 -0.21 -- 0.477 -- -- -0.378 -- 5.2 46 23 4.5
101.69 0.47 10.6 -- 0.897 0.408 -- -- -0.332 19.5 6.313 7 23.5 5.49
157.24 0.586 10.5 -0.172 -- -- -- -- -0.375 -- -- -- -- --
109.03 0.488 10.6 -- 0.921 -- -- -- -0.35 21.1 -- -- -- --
138.56 0.548 10.5 -- -- 0.534 -- -- -0.331 -- 5.1 57 23.1 4.3
158.02 0.587 10.5 -- -- -- -- -- -0.356 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.62 wind 7.0 1440 < th dose independent rect. 23 1
2 80.67 radiation 20.0 4320 < th dose dependent rect. 23 1
6 81.36 atmosphere 1005.0 30 > th dose dependent rect. 22 1
9 81.46 temperature 10.0 1440 > th dose independent rect. 23 1
12 81.46 temperature 30.0 1440 < th dose independent rect. 23 1
16 81.46 humidity 50.0 1440 > th dose independent rect. 23 1
26 81.46 atmosphere 995.0 1440 > th dose independent rect. 23 1
27 81.46 radiation 1.0 1440 < th dose independent rect. 23 1
47 81.46 temperature 10.0 1440 > th dose independent rect. 24 23
55 81.47 wind 3.0 30 < th dose independent rect. 22 1
56 81.49 humidity 80.0 30 > th dose independent rect. 22 1
57 81.50 atmosphere 1005.0 30 > th dose independent rect. 22 1
59 81.60 temperature 25.0 30 > th dose independent rect. 22 1
61 81.66 temperature 20.0 30 > th dose dependent rect. 22 1
62 81.70 wind 9.0 30 < th dose independent rect. 23 23
64 81.75 precipitation 0.1 30 < th dose independent rect. 22 1
65 81.75 wind 5.0 30 < th dose dependent rect. 22 1
66 81.75 precipitation 0.1 30 < th dose dependent rect. 22 1
71 81.83 wind 1.0 30 > th dose independent rect. 22 1
72 81.83 humidity 60.0 30 > th dose dependent rect. 22 1
78 81.89 temperature 10.0 30 > th dose independent rect. 22 1
80 81.89 temperature 30.0 30 < th dose independent rect. 22 1
81 81.89 humidity 50.0 30 > th dose independent rect. 22 1
85 81.89 atmosphere 1010.0 30 < th dose independent rect. 22 1
87 81.89 radiation 1.0 30 < th dose independent rect. 22 1
92 81.89 temperature 10.0 30 > th dose independent rect. 23 23
93 81.89 radiation 1.0 30 < th dose dependent rect. 22 1
98 81.94 humidity 90.0 30 < th dose independent rect. 22 1
102 82.65 wind 1.0 30 > th dose dependent rect. 22 1
106 82.83 temperature 30.0 30 < th dose dependent rect. 22 1
107 82.91 humidity 90.0 30 < th dose dependent rect. 22 1
109 82.97 atmosphere 1015.0 30 < th dose dependent rect. 22 1
171 92.44 precipitation 0.1 30 < th dose independent rect. 23 23
172 92.44 precipitation 0.1 30 < th dose dependent rect. 23 23
181 94.39 atmosphere 1005.0 30 > th dose dependent rect. 17 6
182 94.88 atmosphere 995.0 30 > th dose independent rect. 23 23
189 95.77 atmosphere 1005.0 30 > th dose dependent rect. 14 9
195 96.17 temperature 10.0 30 > th dose dependent rect. 23 23
196 96.23 temperature 20.0 720 > th dose dependent rect. 23 10
199 96.48 atmosphere 1015.0 30 < th dose independent rect. 23 23
200 96.51 humidity 50.0 10 > th dose independent rect. 23 23
218 97.36 temperature 25.0 270 > th dose independent rect. 23 16
235 97.61 precipitation 0.1 1440 < th dose independent rect. 23 1
237 97.61 precipitation 0.1 1440 < th dose dependent rect. 23 1
239 97.67 temperature 25.0 270 < th dose independent rect. 1 11
258 98.22 wind 1.0 30 > th dose independent rect. 23 23
281 98.57 atmosphere 995.0 30 > th dose dependent rect. 5 18
283 98.60 temperature 25.0 270 > th dose independent rect. 23 12
285 98.62 atmosphere 995.0 90 > th dose dependent rect. 11 12
292 98.74 temperature 25.0 270 < th dose independent sin 5 NA
295 98.74 temperature 20.0 270 > th dose dependent rect. 23 17
305 98.86 temperature 25.0 270 > th dose independent sin 5 NA
337 99.23 temperature 20.0 720 > th dose dependent sin 8 NA
356 99.32 atmosphere 1005.0 90 > th dose independent rect. 17 6
365 99.36 temperature 10.0 720 > th dose dependent rect. 23 12
377 99.44 temperature 10.0 720 > th dose dependent rect. 6 5
381 99.46 atmosphere 1000.0 10 > th dose independent rect. 5 18
385 99.47 temperature 20.0 270 > th dose dependent sin 5 NA
432 99.78 temperature 10.0 720 > th dose dependent rect. 23 10
446 99.87 temperature 30.0 90 < th dose independent rect. 4 19
489 100.10 temperature 25.0 30 > th dose dependent rect. 7 15
501 100.14 temperature 25.0 30 > th dose dependent rect. 7 13
537 100.28 radiation 1.0 720 < th dose dependent rect. 3 5
545 100.30 temperature 25.0 90 > th dose dependent rect. 7 11
559 100.33 radiation 1.0 720 < th dose dependent sin 4 NA
560 100.33 atmosphere 1005.0 270 > th dose dependent rect. 18 2
568 100.36 wind 1.0 90 > th dose independent rect. 23 6
573 100.37 humidity 70.0 90 > th dose independent rect. 17 6
585 100.39 atmosphere 1005.0 90 > th dose independent rect. 13 10
598 100.42 humidity 90.0 720 > th dose dependent rect. 4 6
603 100.43 precipitation 0.1 720 < th dose independent rect. 23 10
605 100.43 precipitation 0.1 720 < th dose dependent rect. 23 10
610 100.44 temperature 20.0 720 > th dose dependent rect. 4 1
620 100.46 temperature 25.0 720 > th dose independent rect. 6 5
658 100.52 temperature 10.0 720 > th dose dependent rect. 23 2
668 100.54 humidity 60.0 90 > th dose independent rect. 23 12
675 100.55 wind 5.0 90 < th dose independent rect. 23 5
676 100.55 humidity 90.0 720 > th dose dependent sin 2 NA
689 100.57 wind 1.0 270 > th dose independent rect. 23 2
690 100.57 humidity 90.0 4320 > th dose dependent rect. 6 2
692 100.57 radiation 1.0 720 < th dose dependent rect. 18 14
694 100.58 radiation 40.0 720 < th dose independent rect. 23 10
697 100.58 atmosphere 995.0 720 > th dose dependent rect. 11 2
728 100.63 temperature 25.0 720 > th dose independent rect. 6 3
737 100.64 temperature 25.0 1440 < th dose independent rect. 18 9
741 100.65 humidity 80.0 43200 > th dose dependent rect. 16 9
753 100.68 atmosphere 995.0 720 > th dose independent rect. 17 6
754 100.68 wind 1.0 14400 < th dose independent rect. 19 11
770 100.70 temperature 10.0 270 > th dose dependent rect. 6 12
779 100.71 temperature 10.0 90 > th dose dependent rect. 23 19
798 100.75 humidity 80.0 43200 > th dose dependent rect. 17 7
813 100.78 precipitation 0.1 10 < th dose independent rect. 5 18
819 100.78 precipitation 0.1 10 < th dose dependent rect. 5 18
830 100.81 temperature 25.0 30 > th dose independent rect. 18 5
841 100.82 temperature 20.0 4320 > th dose dependent rect. 2 1
849 100.83 atmosphere 1000.0 90 > th dose independent rect. 11 12
857 100.84 radiation 1.0 30 < th dose dependent rect. 23 6
878 100.88 wind 5.0 270 < th dose independent rect. 23 2
879 100.88 temperature 25.0 270 > th dose independent rect. 6 9
880 100.88 precipitation 0.1 720 < th dose independent rect. 21 14
890 100.88 precipitation 0.1 720 < th dose dependent rect. 21 14
895 100.89 temperature 10.0 10 > th dose independent rect. 23 6
896 100.89 temperature 30.0 10 < th dose independent rect. 23 6
897 100.89 humidity 50.0 10 > th dose independent rect. 23 6
900 100.89 atmosphere 995.0 10 > th dose independent rect. 23 6
901 100.89 radiation 1.0 10 < th dose independent rect. 23 6
907 100.89 temperature 10.0 10 > th dose independent rect. 5 18
909 100.89 atmosphere 1015.0 10 < th dose independent rect. 5 18
917 100.89 temperature 25.0 10 > th dose dependent rect. 7 22
976 100.94 humidity 90.0 43200 > th dose independent rect. 21 1
985 100.95 wind 7.0 90 < th dose independent rect. 23 12
992 100.95 temperature 25.0 30 > th dose dependent rect. 19 23
993 100.96 temperature 30.0 720 < th dose independent rect. 11 1
994 100.96 wind 3.0 30 < th dose independent rect. 20 3
995 100.96 temperature 30.0 90 < th dose independent rect. 17 6