BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0602200 Os04g0602200|AK120467
         (367 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31410.1  | chr1:11247094-11249345 REVERSE LENGTH=525          434   e-122

>AT1G31410.1 | chr1:11247094-11249345 REVERSE LENGTH=525
          Length = 524

 Score =  434 bits (1117), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/372 (55%), Positives = 277/372 (74%), Gaps = 12/372 (3%)

Query: 1   KFSPEFRTNLDVLYSEMSQCLDKGQLKQKSAMAADVVSIGDSWLGYAIRKGLVEPVKNAE 60
           +   +FR NL+ ++ ++S+    G+    S  AAD++SIGDSWL +AI++ L+EP+K  E
Sbjct: 145 RLKTQFRGNLEEIFFDLSKPSKNGKKGAASTAAADMISIGDSWLSFAIKEKLIEPMKGIE 204

Query: 61  EQDWFQSLSNRWKIHLCRNRNGEVDPNGSIWAVPYRWGTVVIAYKKNKFKRHNLKPIQDW 120
           +QDW++ LS++WKI+L RN  GE  P+G  WAVPYRWGT+VIAYKK+KF+ + L PI+DW
Sbjct: 205 DQDWYKGLSDKWKIYLRRNYAGEKAPDGETWAVPYRWGTMVIAYKKSKFQNYKLAPIEDW 264

Query: 121 GDLWRPELAGKISMVDSPREVIGAVLKHLGSSYNTNDMESEITGGRETVLESLTQLQNQV 180
            DLWRPELAG+I+MV+SPREV+GAVLK++ +SYNT D++S++ GGR  V ++L  L  Q+
Sbjct: 265 ADLWRPELAGRIAMVNSPREVVGAVLKYMRASYNTTDLDSQVPGGRLAVEKNLASLMKQI 324

Query: 181 QLFDSTNYLKSFGVGDVWVAVGWSSDVIPAAKRMSDVAVVVPKSGSSLWADLWAIPSATK 240
           +LFDS NYLK+F VGDVWV VGWSSDVIP AKRMS+V V+VPKSG++LWADLWAIP+ + 
Sbjct: 325 RLFDSNNYLKAFNVGDVWVTVGWSSDVIPVAKRMSNVTVIVPKSGATLWADLWAIPAVSD 384

Query: 241 F--QTDRIGGRTRGPSPLINQWFDFCLQSARSLPFRQDVIPGASPLFLEKPVPEVPQERN 298
              + ++ GGR RGPSPLINQW +FCLQ ARSLPF ++VIPGASP  L+ P+   P++  
Sbjct: 385 SGKEAEQRGGRVRGPSPLINQWIEFCLQPARSLPFTREVIPGASPSALDGPLVTEPEKTK 444

Query: 299 KRKPKLETNLVRGAPPLEILEKCEFLEPLSEKALDDYQWLITRM----QRPNRGLFGNLL 354
           K + KL+TNLV G PP EIL KCEFLEPL E  L +Y+ LI  +    QRP       L+
Sbjct: 445 KDRTKLDTNLVTGVPPPEILSKCEFLEPLPEATLSEYRLLIETVRKQSQRP------GLV 498

Query: 355 QNISSVLNFKSR 366
           + +  +++ K R
Sbjct: 499 EKLKDIVSIKVR 510



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,620,810
Number of extensions: 380189
Number of successful extensions: 922
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 921
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,364,969
Effective search space: 2233446723
Effective search space used: 2233446723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)