Os04g0600100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0600100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 268.16 | 0.769 | 5.04 | 0.769 | 1.11 | 3.17 | 0.292 | -0.372 | -0.819 | 22.3 | 18.32 | 20 | -- | -- |
| 268.27 | 0.763 | 5.03 | 0.828 | 1.11 | 3.17 | 0.371 | -- | -0.803 | 22.3 | 18.2 | 19 | -- | -- |
| 268.45 | 0.763 | 5.05 | 0.744 | 1.1 | 3.15 | -- | -0.546 | -0.825 | 22.3 | 18.31 | 19 | -- | -- |
| 268.8 | 0.764 | 5.03 | 0.813 | 1.11 | 3.17 | -- | -- | -0.801 | 22.3 | 18.1 | 19 | -- | -- |
| 282.9 | 0.783 | 5.01 | 0.736 | -- | 3.01 | -- | -0.193 | -0.802 | -- | 17.69 | 427 | -- | -- |
| 401.2 | 0.939 | 4.91 | 1.51 | 1.15 | -- | 0.274 | -- | -0.273 | 18.4 | -- | -- | -- | -- |
| 401.39 | 0.938 | 4.91 | 1.51 | 1.15 | -- | -- | -- | -0.272 | 18.4 | -- | -- | -- | -- |
| 282.83 | 0.783 | 5.01 | 0.753 | -- | 2.89 | -- | -- | -0.802 | -- | 18.5 | 465 | -- | -- |
| 284.26 | 0.785 | 5.06 | -- | 1.17 | 3.64 | -- | -- | -0.934 | 22.6 | 17.14 | 19 | -- | -- |
| 470.03 | 1.01 | 4.89 | 1.48 | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
| 461.35 | 1 | 4.95 | -- | 1.13 | -- | -- | -- | -0.44 | 18.5 | -- | -- | -- | -- |
| 296.69 | 0.802 | 5.03 | -- | -- | 3.42 | -- | -- | -0.904 | -- | 16.5 | 468 | -- | -- |
| 527.72 | 1.07 | 4.93 | -- | -- | -- | -- | -- | -0.46 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 265.00 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 3 | 266.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 6 | 268.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 12 | 270.39 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 16 | 270.82 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 19 | 271.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 24 | 271.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 27 | 272.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 39 | 273.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 40 | 273.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 48 | 273.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 51 | 273.86 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 60 | 274.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 61 | 274.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 69 | 274.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 90 | 276.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 117 | 277.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 120 | 277.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 127 | 277.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 129 | 277.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 151 | 278.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 154 | 278.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 173 | 279.21 | temperature | 15 | 720 | > th | dose dependent | sin | 2 | NA |
| 178 | 279.38 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 295 | 282.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 378 | 284.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 410 | 285.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 469 | 286.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 480 | 286.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 499 | 286.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 663 | 288.94 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 748 | 290.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 964 | 293.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |