BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0600100 Os04g0600100|AK072897
         (130 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38695.3  | chr2:16177946-16180236 FORWARD LENGTH=261           49   9e-07

>AT2G38695.3 | chr2:16177946-16180236 FORWARD LENGTH=261
          Length = 260

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 49/166 (29%)

Query: 4   SAEMRAKVAKLGLATVLAYGLFDAVTYTTFFVLAFLGYEKSTGK-NPAANLKALLGIVIL 62
           S E+  K+ + GL+ +L+YGL + V Y+T F+L +     + GK    A  +  L ++ +
Sbjct: 87  SEELLKKLKRYGLSGILSYGLLNTVYYSTAFLLVWFYVAPAPGKMGYLAAAERFLKVMAM 146

Query: 63  MWTGNNVTRPFRVAG--------------------------------------------- 77
           +W G+ VT+  R+ G                                             
Sbjct: 147 VWAGSQVTKLIRIGGEHVKFLGDKHSRWMQDSRTCTCICSFDCYCRPYLVVMLLPMKNVD 206

Query: 78  ---AAALAPAIDKGLKGIQEKLNLPSQMYAFALVVGSVAAVCFTIF 120
              A ALAP +D+GL     K N  SQ  AF  +VG    +   +F
Sbjct: 207 GCRAVALAPIVDRGLSWFTVKCNFESQGKAFGALVGICLGMALMLF 252



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,409,337
Number of extensions: 82974
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 43
Effective length of database: 8,721,377
Effective search space: 375019211
Effective search space used: 375019211
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)