Os04g0599700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cobalamin (vitamin B12) biosynthesis P47K domain containing protein.
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Os04g0599700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cobalamin (vitamin B12) biosynthesis P47K domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.93 | 0.415 | 8.19 | 0.629 | 2.12 | 1.58 | 1.6 | -3.5 | 0.123 | 18.9 | 24.16 | 1664 | -- | -- |
| 82.96 | 0.424 | 8.08 | 1.57 | 2.11 | 1.32 | 1.51 | -- | 0.341 | 18.8 | 23.06 | 1717 | -- | -- |
| 84.44 | 0.428 | 8.18 | 0.659 | 2.14 | 1.56 | -- | -3.24 | 0.134 | 18.9 | 24.08 | 1651 | -- | -- |
| 88.71 | 0.439 | 8.08 | 1.55 | 2.12 | 1.29 | -- | -- | 0.328 | 18.9 | 22.98 | 1738 | -- | -- |
| 169.09 | 0.606 | 8.12 | 0.811 | -- | 3.13 | -- | -3.62 | 0.0652 | -- | 23.92 | 488 | -- | -- |
| 136.9 | 0.549 | 8.03 | 2.01 | 2.23 | -- | 1.49 | -- | 0.578 | 18.9 | -- | -- | -- | -- |
| 142.61 | 0.559 | 8.03 | 1.98 | 2.23 | -- | -- | -- | 0.582 | 19 | -- | -- | -- | -- |
| 173.22 | 0.613 | 8.05 | 1.4 | -- | 2.84 | -- | -- | 0.234 | -- | 23.97 | 483 | -- | -- |
| 102.14 | 0.471 | 8.21 | -- | 2.26 | 2.49 | -- | -- | -0.249 | 18.9 | 12.65 | 8928 | -- | -- |
| 404.51 | 0.94 | 7.98 | 1.93 | -- | -- | -- | -- | 0.54 | -- | -- | -- | -- | -- |
| 245.7 | 0.733 | 8.08 | -- | 2.21 | -- | -- | -- | 0.361 | 19 | -- | -- | -- | -- |
| 221.94 | 0.694 | 8.1 | -- | -- | 3.09 | -- | -- | -0.0112 | -- | 23.28 | 495 | -- | -- |
| 502.93 | 1.05 | 8.03 | -- | -- | -- | -- | -- | 0.326 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 2 | 70.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 30 | 74.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 45 | 75.73 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 57 | 76.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 108 | 77.96 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 112 | 78.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 132 | 79.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 134 | 79.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 141 | 79.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 156 | 79.70 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 158 | 79.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 12 |
| 165 | 79.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 17 |
| 178 | 79.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 182 | 79.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 21 |
| 192 | 79.82 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 21 |
| 204 | 79.86 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 226 | 79.92 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 251 | 79.98 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 254 | 79.99 | wind | 7 | 43200 | > th | dose dependent | sin | 20 | NA |
| 307 | 80.09 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 459 | 80.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 484 | 80.58 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 500 | 80.63 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 503 | 80.64 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 540 | 80.73 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 564 | 80.80 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 601 | 80.88 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 649 | 81.03 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 655 | 81.05 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 671 | 81.09 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 702 | 81.16 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 16 |
| 730 | 81.23 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 16 |
| 745 | 81.26 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 826 | 81.40 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 891 | 81.49 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 916 | 81.53 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 22 |
| 932 | 81.55 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 959 | 81.59 | wind | 9 | 43200 | > th | dose independent | sin | 15 | NA |
| 973 | 81.60 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 980 | 81.61 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 16 |