BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0599700 Os04g0599700|AK065249
(411 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15730.1 | chr1:5407535-5409937 REVERSE LENGTH=449 373 e-104
AT1G80480.1 | chr1:30258272-30260570 REVERSE LENGTH=445 309 2e-84
AT1G26520.1 | chr1:9163448-9165594 REVERSE LENGTH=375 201 4e-52
>AT1G15730.1 | chr1:5407535-5409937 REVERSE LENGTH=449
Length = 448
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/360 (52%), Positives = 236/360 (65%), Gaps = 16/360 (4%)
Query: 68 DTRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDSSLVASHSSVAEDI 127
D R+PAT+ITGFLGSGKTTLLNHILT HGKRIAVIENEFGEVDID SLVA+ ++ AEDI
Sbjct: 89 DNRIPATIITGFLGSGKTTLLNHILTGDHGKRIAVIENEFGEVDIDGSLVAAQTAGAEDI 148
Query: 128 VMVNNGCLCCTVRGDXXXXXXXXXXXXGDKFDHIVIETTGLAKPGPVIETFCSDELVSRY 187
+M+NNGCLCCTVRGD +FDHIVIETTGLA P P+I+TF +++ +
Sbjct: 149 MMLNNGCLCCTVRGDLVRMISEMVQTKKGRFDHIVIETTGLANPAPIIQTFYAEDEIFND 208
Query: 188 VKLDGVVTMVDCKHAMKHLNEVKARWVVNEAVEQVAYADRIILNKTDLVDNAELEVLINK 247
VKLDGVVT+VD KHA HL+EVK VNEAVEQ+AYADRII+NKTDLV EL ++ +
Sbjct: 209 VKLDGVVTLVDAKHARLHLDEVKPEGYVNEAVEQIAYADRIIVNKTDLVGEPELASVMQR 268
Query: 248 IKLINGMAQMRKTKFGDVDMDFVLGIGGYDLDRIESEVQLHERKETXXXXXXXXXXXXXX 307
IK IN MA M++TK+G VD+D+VLGIGG+DL+RIES V E+++
Sbjct: 269 IKTINSMAHMKRTKYGKVDLDYVLGIGGFDLERIESSVNEEEKEDREGHDDHHHGHDCHD 328
Query: 308 XXXXXXXXXXXXXXXXXXX----------------LDLDEVNDWLERLVEEKGEDLYRLK 351
LDL++ N WL L+ ++ ED+YR+K
Sbjct: 329 HHNEHEHEHEHEHHHSHDHTHDPGVGSVSIVCEGDLDLEKANMWLGALLYQRSEDIYRMK 388
Query: 352 GVISVNESTGRFVFQGVHSMLEGCPAKPWEPDEKRFNKLVFIGRNLDEAALRKAFKGCLL 411
G++SV + RFVFQGVH + EG P + W DE R NK+VFIG+NL+ L F+ CL+
Sbjct: 389 GILSVQDMDERFVFQGVHEIFEGSPDRLWRKDETRTNKIVFIGKNLNREELEMGFRACLI 448
>AT1G80480.1 | chr1:30258272-30260570 REVERSE LENGTH=445
Length = 444
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 153/219 (69%), Positives = 175/219 (79%)
Query: 68 DTRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDSSLVASHSSVAEDI 127
D R+PAT+ITGFLGSGKTTLLNHILT HGKRIAVIENEFGEVDID SLVAS S AEDI
Sbjct: 86 DNRIPATIITGFLGSGKTTLLNHILTRDHGKRIAVIENEFGEVDIDGSLVASKSIGAEDI 145
Query: 128 VMVNNGCLCCTVRGDXXXXXXXXXXXXGDKFDHIVIETTGLAKPGPVIETFCSDELVSRY 187
VM+NNGCLCCTVRGD KFDHIVIETTGLA P P+I+TF ++E +
Sbjct: 146 VMLNNGCLCCTVRGDLVRMIGELVNTKKGKFDHIVIETTGLANPAPIIQTFYAEEEIFND 205
Query: 188 VKLDGVVTMVDCKHAMKHLNEVKARWVVNEAVEQVAYADRIILNKTDLVDNAELEVLINK 247
VKLDGVVT+VD KHA HL+EVK VVNEAVEQ+AYADRII+NKTDLV AEL ++ +
Sbjct: 206 VKLDGVVTLVDAKHARLHLDEVKPEGVVNEAVEQIAYADRIIVNKTDLVGEAELGSVVQR 265
Query: 248 IKLINGMAQMRKTKFGDVDMDFVLGIGGYDLDRIESEVQ 286
IK IN MAQM +TK+G+VD+D+VLGIGG+DL+RIES V
Sbjct: 266 IKTINSMAQMTRTKYGNVDLDYVLGIGGFDLERIESSVN 304
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 61/85 (71%)
Query: 327 LDLDEVNDWLERLVEEKGEDLYRLKGVISVNESTGRFVFQGVHSMLEGCPAKPWEPDEKR 386
LDL++ N WL L+ E+ ED+YR+KG++SV+ RFVFQGVH + +G P + W +E+R
Sbjct: 360 LDLEKANMWLGTLLMERSEDIYRMKGLLSVHTMEERFVFQGVHDIFQGSPDRLWGREEER 419
Query: 387 FNKLVFIGRNLDEAALRKAFKGCLL 411
NK+VFIG+NL+ L K FK CL+
Sbjct: 420 VNKIVFIGKNLNREELEKGFKACLI 444
>AT1G26520.1 | chr1:9163448-9165594 REVERSE LENGTH=375
Length = 374
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 184/347 (53%), Gaps = 24/347 (6%)
Query: 71 VPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGE-VDIDSSLV--ASHSSVAEDI 127
V +VITG+LG+GK+TL+N+IL +HGKRIAVI NEFGE + ++ +++ ++ E+
Sbjct: 42 VGVSVITGYLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEEGAIVEEW 101
Query: 128 VMVNNGCLCCTVRGDXXXXXXXXXXXXGDKFDHIVIETTGLAKPGPVIETFCSDELVSRY 187
V + NGC+CCTV+ D+ DHI++ETTGLA P P+ D+ +
Sbjct: 102 VELANGCVCCTVKHSLVQALEQLVQRK-DRLDHILLETTGLANPAPLASILWLDDQLESE 160
Query: 188 VKLDGVVTMVDCKHAMKHLNEVKARWVVNEAVEQVAYADRIILNKTDLVDNAELEVLINK 247
VKLD +VT+VD K+ LNE + EA Q+A+AD II+NK DL+ E + L +
Sbjct: 161 VKLDCIVTVVDAKNLRFQLNERRDSSSFPEAFNQIAFADTIIMNKVDLISQEESDELEKE 220
Query: 248 IKLINGMAQMRKTKFGDVDMDFVLGIGGYD---LDRIESEVQLHERKETXXXXXXXXXXX 304
I IN +A + ++ VD+ +L YD + R+ES ++ ++ T
Sbjct: 221 IHSINSLANVIRSVRCQVDLSNILNCQAYDSTHVSRLESLLEANKSLTT----------- 269
Query: 305 XXXXXXXXXXXXXXXXXXXXXXLDLDEVNDWLERLVEEKGE--DLYRLKGVISVNESTGR 362
++LD+V WLE ++ +K D+YR K V+S+ S
Sbjct: 270 ----TDLHDSGVRTLCISEPQPINLDKVRLWLEEILWDKKSEMDVYRCKAVLSIQNSDQM 325
Query: 363 FVFQGVHSMLEGCPAKPWEPDEKRFNKLVFIGRNLDEAALRKAFKGC 409
+ Q V + E PA+ W +E R NK+VFIG LDE LR + C
Sbjct: 326 HILQAVRDIYEIVPARKWSEEENRTNKIVFIGHKLDEEVLRSGLRDC 372
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,942,275
Number of extensions: 259788
Number of successful extensions: 847
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 844
Number of HSP's successfully gapped: 6
Length of query: 411
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 310
Effective length of database: 8,337,553
Effective search space: 2584641430
Effective search space used: 2584641430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)