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Os04g0592400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : t-snare domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0234) R2 : 0.899
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.14 (0.0613) R2dC : 0.588 R2C : 0.615
β3 : -2.43 (0.0689) R2dE : 0.284 R2E : 0.306
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.114 (0.0493) R2dN8 : 0.00155 R2N8 : -0.00291
σ : 0.439
deviance : 88.78
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C
peak time of C : 6.27
E
wheather : temperature
threshold : 13.37
memory length : 200
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5
open length of G : 10.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.26 0.405 11.9 -0.732 3.21 -2.53 0.993 -0.492 0.0171 6.55 9.249 216 4.97 10.3
74.49 0.402 11.9 -0.712 3.21 -2.49 0.968 -- 0.0234 6.5 9.888 205 4.95 10.4
76.41 0.407 11.9 -0.711 3.19 -2.48 -- -0.354 0.0138 6.51 9.573 200 5.07 10.4
76.65 0.408 11.9 -0.699 3.2 -2.49 -- -- 0.023 6.48 10.14 203 4.97 10.5
136.06 0.543 12 -0.447 -- -3.84 -- -0.0711 -0.00468 -- -5.269 432 6.45 12
117.93 0.509 11.9 -0.873 3.7 -- 1.2 -- -0.116 4.37 -- -- -- --
121.89 0.517 11.9 -0.883 3.71 -- -- -- -0.123 4.37 -- -- -- --
114.43 0.498 12 -0.574 -- -4.24 -- -- 0.0372 -- -14.61 559 4.98 12.9
88.78 0.439 11.9 -- 3.14 -2.43 -- -- 0.114 6.27 13.37 200 5 10.5
860.2 1.37 12 -0.737 -- -- -- -- -0.0244 -- -- -- -- --
142.44 0.558 11.9 -- 3.69 -- -- -- -0.0242 4.38 -- -- -- --
117.84 0.506 11.9 -- -- -4.69 -- -- 0.0857 -- -21.15 688 4.77 11.1
874.51 1.38 11.9 -- -- -- -- -- 0.0573 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.33 temperature 10 270 > th dose dependent rect. 5 10
3 80.22 temperature 20 90 > th dose dependent rect. 6 10
22 83.36 temperature 25 90 > th dose dependent rect. 21 19
31 83.86 temperature 25 10 > th dose dependent rect. 21 19
75 85.54 temperature 10 270 > th dose dependent rect. 19 20
103 86.46 temperature 10 90 > th dose dependent rect. 19 22
231 89.07 temperature 25 10 > th dose dependent sin 2 NA
233 89.11 temperature 25 90 > th dose dependent sin 3 NA
321 90.61 temperature 25 270 > th dose dependent sin 6 NA
352 91.06 radiation 40 270 < th dose independent rect. 9 10
380 91.64 temperature 25 270 > th dose independent rect. 6 8
462 92.72 temperature 30 90 < th dose independent rect. 2 10
484 93.14 radiation 40 270 < th dose independent rect. 23 22
565 94.54 radiation 40 270 < th dose independent rect. 1 18
584 94.78 temperature 30 90 < th dose dependent rect. 3 16
611 95.06 temperature 10 10 > th dose dependent sin 1 NA
620 95.16 radiation 40 90 < th dose dependent rect. 9 12
622 95.17 temperature 30 90 < th dose dependent rect. 3 10
626 95.21 temperature 30 270 < th dose independent rect. 24 11
647 95.45 temperature 30 30 < th dose dependent sin 1 NA
747 96.37 temperature 25 10 > th dose independent rect. 7 9
765 96.55 wind 7 270 < th dose independent rect. 5 10
787 96.73 radiation 40 90 < th dose dependent rect. 2 19
789 96.74 radiation 1 90 > th dose dependent rect. 12 23
812 96.86 radiation 40 270 < th dose independent rect. 24 11
815 96.88 radiation 40 270 < th dose dependent rect. 23 20
846 97.18 radiation 40 90 < th dose dependent rect. 15 22
870 97.39 radiation 40 90 < th dose dependent rect. 16 20
889 97.47 temperature 15 10 > th dose dependent rect. 7 19
912 97.60 temperature 15 90 > th dose dependent rect. 6 20
949 97.86 wind 7 270 < th dose independent rect. 19 20