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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0590300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0303) R2 : 0.0126
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.154 (0.0638) R2dN8 : 0.0162 R2N8 : 0.0126
σ : 0.57
deviance : 149.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.6 0.545 3.02 -0.572 0.18 1.06 -0.647 -2.06 0.159 3.13 0.2999 874 -- --
136.11 0.543 3 -0.543 0.186 0.996 -0.584 -- 0.166 3.38 0.2999 873 -- --
135.75 0.543 3.02 -0.558 0.179 1.01 -- -1.86 0.158 4.24 0.1978 867 -- --
137.06 0.545 3 -0.538 0.197 0.909 -- -- 0.159 4.34 0.2 873 -- --
137.74 0.547 3.02 -0.543 -- 1.01 -- -1.91 0.159 -- 0.2 867 -- --
141.64 0.558 3.01 -0.438 0.189 -- -0.596 -- 0.0982 4.12 -- -- -- --
142.22 0.558 3.01 -0.431 0.21 -- -- -- 0.101 5.7 -- -- -- --
138.55 0.548 3 -0.525 -- 0.91 -- -- 0.166 -- 0.225 684 -- --
143.96 0.559 2.99 -- 0.18 0.683 -- -- 0.196 4.44 0.2959 692 -- --
144.51 0.562 3.01 -0.424 -- -- -- -- 0.106 -- -- -- -- --
147.11 0.567 3 -- 0.203 -- -- -- 0.149 5.79 -- -- -- --
145.4 0.562 2.99 -- -- 0.716 -- -- 0.209 -- 0.297 684 -- --
149.26 0.57 3 -- -- -- -- -- 0.154 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 125.43 humidity 90.0 10 < th dose dependent rect. 24 2
2 125.74 atmosphere 1005.0 10 > th dose independent rect. 24 2
9 128.01 humidity 90.0 90 < th dose independent rect. 24 1
11 128.09 humidity 90.0 10 < th dose dependent rect. 22 5
12 128.25 atmosphere 1005.0 30 > th dose dependent rect. 24 2
13 128.40 wind 1.0 1440 < th dose dependent rect. 21 1
19 128.60 humidity 90.0 10 < th dose independent rect. 24 2
20 128.77 wind 1.0 720 < th dose dependent rect. 23 3
22 128.83 wind 1.0 720 < th dose dependent rect. 15 11
56 130.35 wind 3.0 10 < th dose independent rect. 24 2
59 130.47 humidity 50.0 4320 < th dose independent rect. 12 2
61 130.50 wind 5.0 10 < th dose dependent rect. 24 2
68 130.73 wind 5.0 90 < th dose independent rect. 24 1
91 130.83 humidity 90.0 10 < th dose independent rect. 22 5
93 130.92 humidity 90.0 90 < th dose independent rect. 21 5
100 131.14 wind 7.0 90 < th dose dependent rect. 24 1
111 131.51 wind 1.0 90 > th dose independent rect. 24 1
113 131.63 wind 1.0 1440 < th dose dependent rect. 19 4
114 131.65 temperature 10.0 90 > th dose dependent rect. 24 1
118 131.68 humidity 80.0 90 > th dose independent rect. 24 1
121 131.72 temperature 15.0 90 > th dose independent rect. 24 1
125 131.76 precipitation 0.1 90 < th dose independent rect. 24 1
126 131.76 precipitation 0.1 90 < th dose dependent rect. 24 1
129 131.77 temperature 30.0 90 < th dose independent rect. 24 1
130 131.77 humidity 50.0 90 > th dose independent rect. 24 1
134 131.77 radiation 1.0 90 < th dose independent rect. 24 1
140 131.77 temperature 10.0 90 > th dose independent rect. 1 23
141 131.77 atmosphere 995.0 90 > th dose independent rect. 1 23
142 131.77 radiation 1.0 90 < th dose dependent rect. 24 1
148 131.79 wind 1.0 720 < th dose independent rect. 24 1
149 131.81 atmosphere 1010.0 90 < th dose independent rect. 24 1
159 131.96 precipitation 0.1 90 < th dose independent rect. 1 23
160 131.96 precipitation 0.1 90 < th dose dependent rect. 1 23
177 132.23 atmosphere 1015.0 10 < th dose independent rect. 2 22
183 132.38 temperature 10.0 10 > th dose dependent rect. 24 2
191 132.47 temperature 15.0 270 > th dose independent rect. 21 4
192 132.48 precipitation 0.1 10 < th dose independent rect. 2 22
193 132.48 precipitation 0.1 10 < th dose dependent rect. 2 22
199 132.57 temperature 10.0 270 > th dose dependent rect. 21 4
202 132.60 precipitation 0.1 10 < th dose independent rect. 24 2
203 132.60 precipitation 0.1 10 < th dose dependent rect. 24 2
211 132.66 wind 1.0 1440 < th dose independent rect. 21 1
214 132.67 temperature 15.0 30 > th dose dependent rect. 22 4
227 132.79 temperature 15.0 10 > th dose independent rect. 24 2
241 132.96 humidity 90.0 270 < th dose independent rect. 22 1
245 132.96 temperature 30.0 10 < th dose independent rect. 24 2
246 132.96 humidity 50.0 10 > th dose independent rect. 24 2
250 132.96 radiation 1.0 10 < th dose independent rect. 24 2
255 132.96 temperature 10.0 10 > th dose independent rect. 2 22
256 132.96 radiation 1.0 10 < th dose dependent rect. 24 2
264 133.01 atmosphere 995.0 10 > th dose independent rect. 2 22
279 133.10 atmosphere 1010.0 10 < th dose independent rect. 24 2
284 133.17 temperature 15.0 10 > th dose independent rect. 22 4
301 133.30 temperature 10.0 270 > th dose dependent rect. 21 2
304 133.35 wind 1.0 30 > th dose independent rect. 2 22
307 133.37 humidity 50.0 90 > th dose dependent rect. 24 1
321 133.43 humidity 90.0 270 < th dose dependent rect. 21 2
323 133.44 wind 5.0 30 < th dose dependent rect. 22 4
357 133.50 wind 9.0 270 < th dose dependent rect. 21 4
375 133.55 wind 5.0 270 < th dose independent rect. 21 4
379 133.56 wind 1.0 720 < th dose dependent rect. 4 22
383 133.58 wind 1.0 1440 < th dose independent rect. 18 7
409 133.60 atmosphere 1015.0 270 < th dose independent rect. 1 20
412 133.62 temperature 15.0 270 > th dose independent rect. 22 1
413 133.62 temperature 30.0 90 < th dose dependent rect. 24 1
415 133.63 atmosphere 1015.0 30 < th dose dependent rect. 24 1
432 133.69 wind 1.0 720 < th dose independent rect. 15 11
433 133.69 wind 1.0 30 > th dose dependent rect. 24 1
438 133.71 radiation 10.0 43200 < th dose dependent rect. 1 2
445 133.73 wind 1.0 1440 > th dose independent rect. 19 4
453 133.76 temperature 10.0 1440 > th dose independent rect. 1 1
456 133.76 temperature 25.0 30 > th dose independent rect. 24 1
457 133.76 temperature 30.0 1440 < th dose independent rect. 1 1
461 133.76 humidity 50.0 1440 > th dose independent rect. 1 1
471 133.76 atmosphere 995.0 1440 > th dose independent rect. 1 1
472 133.76 radiation 1.0 1440 < th dose independent rect. 1 1
492 133.76 temperature 10.0 1440 > th dose independent rect. 2 23
496 133.76 radiation 1.0 1440 < th dose dependent rect. 1 1
503 133.77 temperature 15.0 10 > th dose independent rect. 10 16
504 133.77 wind 9.0 10 < th dose independent rect. 2 22
506 133.78 temperature 30.0 270 < th dose independent rect. 21 15
512 133.81 wind 1.0 1440 < th dose independent rect. 19 4
518 133.82 temperature 30.0 270 < th dose independent rect. 21 4
519 133.82 humidity 50.0 270 > th dose independent rect. 21 4
523 133.82 radiation 1.0 270 < th dose independent rect. 21 4
528 133.82 precipitation 0.1 270 < th dose independent rect. 21 4
530 133.82 temperature 10.0 270 > th dose independent rect. 1 20
534 133.82 radiation 1.0 270 < th dose dependent rect. 21 4
539 133.82 precipitation 0.1 270 < th dose dependent rect. 21 4
541 133.83 radiation 40.0 43200 < th dose dependent rect. 1 1
547 133.86 precipitation 0.1 270 < th dose independent rect. 1 20
548 133.86 precipitation 0.1 270 < th dose dependent rect. 1 20
549 133.87 wind 7.0 10 < th dose independent rect. 2 8
551 133.88 atmosphere 1015.0 270 < th dose independent rect. 12 9
552 133.88 wind 5.0 10 > th dose dependent rect. 12 1
574 133.94 wind 3.0 30 < th dose independent rect. 22 4
579 133.95 atmosphere 995.0 270 > th dose independent rect. 1 20
639 133.97 wind 9.0 270 < th dose independent rect. 21 15
644 133.99 temperature 25.0 30 > th dose independent rect. 22 6
645 133.99 temperature 15.0 270 > th dose independent rect. 21 15
654 134.02 atmosphere 1010.0 270 < th dose independent rect. 21 4
659 134.04 temperature 25.0 30 > th dose independent rect. 22 4
661 134.04 wind 9.0 90 < th dose independent rect. 1 23
664 134.05 atmosphere 1000.0 270 > th dose independent rect. 21 15
676 134.10 wind 1.0 270 > th dose independent rect. 12 9
677 134.10 wind 1.0 30 > th dose independent rect. 2 20
678 134.10 wind 9.0 270 < th dose independent rect. 1 20
680 134.11 precipitation 0.1 270 < th dose independent rect. 21 15
681 134.11 precipitation 0.1 270 < th dose dependent rect. 21 15
685 134.13 humidity 50.0 270 > th dose independent rect. 21 15
714 134.16 temperature 10.0 270 > th dose independent rect. 12 9
715 134.16 precipitation 0.1 270 < th dose independent rect. 12 9
720 134.16 precipitation 0.1 270 < th dose dependent rect. 12 9
734 134.19 humidity 50.0 10 > th dose independent rect. 2 22
742 134.21 temperature 10.0 10 > th dose dependent rect. 2 8
753 134.25 atmosphere 995.0 270 > th dose independent rect. 12 9
757 134.26 wind 1.0 10 < th dose dependent rect. 4 1
768 134.30 wind 1.0 10 < th dose independent rect. 4 1
772 134.31 precipitation 0.1 10 < th dose independent rect. 2 8
776 134.31 precipitation 0.1 10 < th dose dependent rect. 2 8
785 134.33 wind 9.0 270 < th dose independent rect. 12 9
805 134.37 wind 7.0 270 < th dose dependent rect. 22 1
813 134.38 temperature 25.0 30 > th dose dependent rect. 22 6
826 134.42 radiation 10.0 43200 < th dose dependent rect. 23 4
827 134.43 precipitation 0.1 10 > th dose independent rect. 3 1
831 134.43 precipitation 0.1 10 > th dose dependent rect. 3 1
838 134.44 wind 1.0 30 > th dose independent rect. 2 8
845 134.45 precipitation 0.1 10 < th dose independent rect. 2 20
847 134.45 wind 1.0 720 < th dose dependent sin 17 NA
850 134.45 atmosphere 995.0 90 > th dose dependent rect. 2 7
851 134.45 precipitation 0.1 10 < th dose dependent rect. 2 20
873 134.50 humidity 50.0 270 > th dose independent rect. 1 20
881 134.52 precipitation 0.1 10 < th dose independent rect. 10 16
889 134.52 precipitation 0.1 10 < th dose dependent rect. 10 16
897 134.55 wind 9.0 30 < th dose independent rect. 10 16
934 134.63 temperature 25.0 30 > th dose dependent rect. 24 4
941 134.65 atmosphere 1010.0 270 < th dose independent rect. 22 1
944 134.65 precipitation 0.1 10 < th dose independent rect. 22 4
946 134.65 temperature 10.0 10 > th dose independent rect. 2 8
948 134.65 humidity 50.0 10 > th dose independent rect. 2 8
949 134.65 atmosphere 995.0 10 > th dose independent rect. 2 8
950 134.65 atmosphere 1015.0 10 < th dose independent rect. 2 8
953 134.65 precipitation 0.1 10 < th dose dependent rect. 22 4
958 134.66 radiation 10.0 4320 < th dose dependent rect. 23 4
961 134.67 wind 5.0 270 < th dose independent rect. 22 1
964 134.67 humidity 50.0 10 > th dose independent rect. 10 16
965 134.67 wind 1.0 270 > th dose independent rect. 1 20
990 134.68 atmosphere 995.0 10 > th dose dependent rect. 2 8