BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0590300 Os04g0590300|Os04g0590300
(1205 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | chr4:14333528-14335255 FORWARD LENGTH=576 159 1e-38
AT1G43760.1 | chr1:16528880-16531065 REVERSE LENGTH=627 139 7e-33
ATMG00310.1 | chrM:90883-91347 REVERSE LENGTH=155 132 9e-31
AT3G09510.1 | chr3:2921804-2923258 FORWARD LENGTH=485 91 5e-18
AT3G24255.1 | chr3:8789471-8793208 FORWARD LENGTH=747 84 5e-16
AT4G20520.1 | chr4:11045912-11047716 FORWARD LENGTH=377 73 8e-13
ATMG01250.1 | chrM:310514-310882 FORWARD LENGTH=123 65 2e-10
AT3G25270.1 | chr3:9203934-9204965 REVERSE LENGTH=344 60 1e-08
AT1G40390.1 | chr1:15432576-15434674 REVERSE LENGTH=427 57 6e-08
>AT4G29090.1 | chr4:14333528-14335255 FORWARD LENGTH=576
Length = 575
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 154/317 (48%), Gaps = 10/317 (3%)
Query: 787 ALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLLGGLGFRDI 846
ALPTYTM F +P+ C++ ++ +FWW +++ K +HW AW+ L+ K GG+GF+DI
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 847 RCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVHGLELL 906
FN ALL +Q WR++ P+SL A+V K++Y+ + S S WK I E+L
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 907 KKGLIWRIGDGSKTKIWRNHWVAHGENLKIL--------EKKTWNRVIYVRELIVTDTKT 958
++G +G+G IWR+ W+ L E + + ++ V +LI +
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 959 WNEPLIRHIIREEDADEILKIRIPQREEEDFPAWHYEKTGIFSVRSVYRLAWNLARKTSE 1018
W + +I + E + I ++R R D W Y +G ++V+S Y + + K S
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241
Query: 1019 QASSSSGGADGRKIWDNVWKANVQPKVRVFAWKLAQDRLATWENKKKRKIEMFGTCPICG 1078
S + I+ +WK+ PK++ F WK + L R + C C
Sbjct: 242 PQEVSEPSLN--PIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCP 299
Query: 1079 QKEETGFHATVECTLAK 1095
+ET H +CT A+
Sbjct: 300 SCKETVNHLLFKCTFAR 316
>AT1G43760.1 | chr1:16528880-16531065 REVERSE LENGTH=627
Length = 626
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 179/404 (44%), Gaps = 58/404 (14%)
Query: 157 LMIGDFNDAMWQIEHRSRVKHS--ERQMRDFREVLVECDLQDIGFQCVPWTYDNNQASPN 214
+++GDF+ +H S ++ S R + +F+ L + DL DI + V +T+ N+Q N
Sbjct: 222 ILVGDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDD-N 280
Query: 215 NVKVRLDRAVASPVWRAMFDQANIMHLTTACSDHVP--LLLEKGGNMQQRRRSKINCFEA 272
+ +LDRA+A+ W + F A + + SDH P ++LE N+ +R + F
Sbjct: 281 PIIRKLDRAIANGDWFSSFPSAIAVFELSGVSDHSPCIIILE---NLPKRSKKCFRYFSF 337
Query: 273 VWERVKSFNSIEHESWDDGGLAKNLGDVRTKLAYTMENLKRWSRDKIGNIKKSIXXXXXX 332
+ S+ + + ++ + L + K +R GNI+
Sbjct: 338 LSTHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDS 397
Query: 333 XXXXXXXXXXDSEPDVHRLKIFLQE----LLHREEIWWKQRSRITWLKEGDRNTRYFHLK 388
+ + R++ ++ E +++Q+SRI WL++GD NTR+FH
Sbjct: 398 LESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKV 457
Query: 389 ASWRARKNLIKKLRRSDD----------EM------------NGMLT----------KPF 416
KNLIK LR DD EM + +LT PF
Sbjct: 458 ILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPF 517
Query: 417 --------------TDEEISDALFQIGPLKAPGPDGFPARFFQRNWGVLKRDVIEGVREF 462
+D+EI+ A+F + KAPGPD F A FF +W V+K I V+EF
Sbjct: 518 RCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEF 577
Query: 463 FETGEWKEGMNDTVIVMIPKTNAPVEMKDFRPVSLCNVIYKVVA 506
F TG + N T I +IPK ++ FRPVS C V+YK++
Sbjct: 578 FRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>ATMG00310.1 | chrM:90883-91347 REVERSE LENGTH=155
Length = 154
Score = 132 bits (333), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
Query: 786 QALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLL-GGLGFR 844
ALP Y M F++ + C++ + FWW + ++K+ W+AW+KL K GGLGFR
Sbjct: 1 MALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFR 60
Query: 845 DIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVHGLE 904
D+ FNQALLA+Q++R+I P +L +R+L+++Y+P+ ++ + + + S W+ I+HG E
Sbjct: 61 DLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRE 120
Query: 905 LLKKGLIWRIGDGSKTKIWRNHWV 928
LL +GL+ IGDG TK+W + W+
Sbjct: 121 LLSRGLLRTIGDGIHTKVWLDRWI 144
>AT3G09510.1 | chr3:2921804-2923258 FORWARD LENGTH=485
Length = 484
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 147/379 (38%), Gaps = 65/379 (17%)
Query: 873 LKAKYYPNGTITDTAFPSVSSPTWKGIVHGLELLKKGLIWRIGDGSKTKIWRNHWVAHGE 932
+KA+Y+ + +I D S W ++ G+ LLKKG IGDG +I ++ V
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 933 NLKILEKKTWNRVIYVRELIVTDT-------KTWNEPLIRHIIREEDADEILKIRIPQRE 985
+ ++T+ +E+ + + W++ I + + D I +I + + +
Sbjct: 61 PRPLNTEETY------KEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSK 114
Query: 986 EEDFPAWHYEKTGIFSVRSVYRLAWNLARKTSEQASSSSGGADGRKIWDNVWKANVQPKV 1045
+ D W+Y TG ++VRS Y W L S + + + +W + PK+
Sbjct: 115 KPDKIIWNYNTTGEYTVRSGY---WLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKL 171
Query: 1046 RVFAWKLAQDRLATWENKKKRKIEMFGTCPICGQKEETGFHATVECTLAKALRASLREHW 1105
+ F W+ LAT E R + + +CP C ++ E+ HA C A W
Sbjct: 172 KHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMA-------W 224
Query: 1106 TLPDESL----------------------------FSMTGPDWLL---------VLLDRL 1128
L D SL F P WL+ V+ ++
Sbjct: 225 RLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKF 284
Query: 1129 -SSEKKAQLPARKHMED-IKGKGPMFQDPCQKEQTCQLNAEKEKWSCPPDGSAKLNVDAA 1186
S K L A+ D + + P T Q+ K +W PP K N DA
Sbjct: 285 RESPSKTVLSAKAETHDWLNATQSHKKTP---SPTRQIAENKIEWRNPPATYVKCNFDAG 341
Query: 1187 YRTETGEASAGIIIRDCRG 1205
+ + EA+ G IIR+ G
Sbjct: 342 FDVQKLEATGGWIIRNHYG 360
>AT3G24255.1 | chr3:8789471-8793208 FORWARD LENGTH=747
Length = 746
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 137/360 (38%), Gaps = 47/360 (13%)
Query: 737 KCLGLPTPDGRMKAEQFQPIKERFEKRLTDWSERFLSLAGKEALIKSVAQALPTYTMGVF 796
+ LGLP +M + P+ E+ R+ W+ R LS AG+ LI SV +L + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 797 KMPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLLGGLGFRDIRCFNQALLAR 856
++P +E + + +F W + K +AW + +PK GGLG R ++ N+
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSF-- 143
Query: 857 QAWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVHGLELLKKGLIWRIGD 916
W + +G T + S WK I+ L + I +
Sbjct: 144 --WSI------------------SGNTT------LGSWMWKKILKHRALASGFVKHDIHN 177
Query: 917 GSKTKIWRNHWVAHGENLKILEKKTWNRVIYVRELIVTDTKTWNEPLIRHIIREEDADEI 976
GS T W ++W G + + + ++ +T + E ++ H R D +
Sbjct: 178 GSNTSFWFDNWSKIGRLIDVTGHRG------CIDMGITLHASVAEAVVNHRPRRHRHDTL 231
Query: 977 LKIRIPQREEEDFPAWHYEKTGIFSVRSVYRLAWN-----LARKTSEQASSSSGGADGRK 1031
L+I ED A G+ S R N T E +++
Sbjct: 232 LRI-------EDVIA-EVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVN 283
Query: 1032 IWDNVWKANVQPKVRVFAWKLAQDRLATWENKKKRKIEMFGTCPICGQKEETGFHATVEC 1091
+ VW ++ PK V AW ++RL T + +C +C ET H C
Sbjct: 284 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 343
>AT4G20520.1 | chr4:11045912-11047716 FORWARD LENGTH=377
Length = 376
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 509 LVNRLRPLLQEIISETQSAFVPGRMITDNALVAFECFHSIHKCTRESQDFCALKLDLSKA 568
+V RL+PL+ +I Q++F+PGR+ TDN + E HS+ + + + + LKLDL KA
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRR-KKGVKGWMLLKLDLEKA 59
Query: 569 YDRVDWGFLDGALQKLGFGNIW 590
YDR+ W +L+ L GF +W
Sbjct: 60 YDRIRWDYLEDTLISAGFPEVW 81
>ATMG01250.1 | chrM:310514-310882 FORWARD LENGTH=123
Length = 122
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 44/57 (77%)
Query: 617 PTRGLREGDPLNPYLFLFIADGLSNILQRRRDERQIQPLKVCRSAPGVSHLLFADDS 673
P+RGLR+GDPL+PYLF+ + LS + +R +++ ++ ++V ++P ++HLLFADD+
Sbjct: 24 PSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFADDT 80
>AT3G25270.1 | chr3:9203934-9204965 REVERSE LENGTH=344
Length = 343
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 78/203 (38%), Gaps = 33/203 (16%)
Query: 1036 VWKANVQPKVRVFAWKLAQDRLATWENKKKRKIEMFGTCPICGQKEETGFHATVECTLAK 1095
+WK PK++ F WKL LAT +N K+R I C C Q++ET H +C A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 1096 AL-RASLREHWTLPDESLFSMTGPDWL-----------------------------LVLL 1125
+ RAS H L + T + L LV
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 1126 DRLSSEKKAQLPARKHMEDIKGKGPMFQDPCQKEQTC---QLNAEKEKWSCPPDGSAKLN 1182
+ S + AR +++ + Q Q+ + Q + KW PP K N
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYN 197
Query: 1183 VDAAYRTETGEASAGIIIRDCRG 1205
D A+ +T A AG ++RD G
Sbjct: 198 YDGAFNHQTRNAKAGWLMRDENG 220
>AT1G40390.1 | chr1:15432576-15434674 REVERSE LENGTH=427
Length = 426
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 104/250 (41%), Gaps = 39/250 (15%)
Query: 145 VDETRSLEEDPWLMIGDFNDAMWQIEHRSRVKH--SERQMRDFREVLVECDLQDIGFQCV 202
+ + L PWL++GDFN EH S + S + + D + + + DL D+ + V
Sbjct: 111 LSASSPLCNSPWLVVGDFNQIASVTEHYSLMPSNISLQGLEDLQACMRDSDLVDLPCRGV 170
Query: 203 PWTYDNNQASPNNVKVRLDRAVASPVWRAMFDQANIMHLTTACSDHVPLLLEKGGNMQQR 262
+T+ N+Q N + +LDRA+ + W A F A+ + + SDH ++ +
Sbjct: 171 LYTWSNHQQD-NPILRKLDRAIVNGCWLATFPTASAIFDPPSDSDHAACMVILNNSPPLS 229
Query: 263 RRSKINCFEAVWERVKSFNSIEHESWDD----GGLAKNLGDVRTKLAYTMENLKRWSRDK 318
++ F + +SI +W G +LG++ L + + +R
Sbjct: 230 KKKSFKYFSFLSTHPDFISSIL-AAWQKEIAVGSFMFSLGEL---LKEAKKACRGLNRRG 285
Query: 319 IGNIKKSIXXXXXXXXXXXXXXXXDSEPDVHRLKIFLQELLHRE---------EIWWKQR 369
NI+ + S P +F E + R+ E ++KQ+
Sbjct: 286 FSNIQAQLM----------------SNPSDF---LFRAEHVARKNWNFFAAALESFYKQK 326
Query: 370 SRITWLKEGD 379
SRI WLKEGD
Sbjct: 327 SRIKWLKEGD 336
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 28,114,874
Number of extensions: 1226669
Number of successful extensions: 2844
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2839
Number of HSP's successfully gapped: 10
Length of query: 1205
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1095
Effective length of database: 8,090,809
Effective search space: 8859435855
Effective search space used: 8859435855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)