Os04g0587500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAT dimerisation domain containing protein.
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Os04g0587500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAT dimerisation domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 436.78 | 0.982 | 9.09 | 1.18 | 2.41 | 1.47 | -0.151 | 9.38 | 1.22 | 21 | 29.99 | 1442 | 11 | 1 |
| 472.04 | 1.01 | 9.06 | 3.21 | 2.5 | 2.5 | -1.17 | -- | 1.14 | 20.9 | 30.1 | 1439 | 10.9 | 0.8 |
| 436.03 | 0.973 | 9.09 | 1.19 | 2.39 | 1.45 | -- | 9.4 | 1.21 | 21 | 29.98 | 1437 | 11 | 1.08 |
| 455.59 | 0.994 | 8.93 | 3.43 | 2.48 | 3.11 | -- | -- | 1.35 | 21.1 | 29.96 | 1454 | 10.6 | 1.07 |
| 737.3 | 1.26 | 9.02 | 1.93 | -- | 1.78 | -- | 7.79 | 0.872 | -- | 29.98 | 1354 | 11.2 | 1.22 |
| 861.5 | 1.38 | 8.75 | 2.58 | 2.35 | -- | -0.203 | -- | 1.78 | 20.6 | -- | -- | -- | -- |
| 861.63 | 1.37 | 8.75 | 2.59 | 2.35 | -- | -- | -- | 1.78 | 20.6 | -- | -- | -- | -- |
| 670.3 | 1.21 | 8.88 | 2.46 | -- | 2.38 | -- | -- | 0.818 | -- | 30.94 | 1162 | 11.4 | 1.54 |
| 758.56 | 1.28 | 8.92 | -- | 2.69 | 2.89 | -- | -- | 1.17 | 20.9 | 30 | 1457 | 10.7 | 0.851 |
| 1172.53 | 1.6 | 8.68 | 2.58 | -- | -- | -- | -- | 1.76 | -- | -- | -- | -- | -- |
| 1038.63 | 1.51 | 8.81 | -- | 2.34 | -- | -- | -- | 1.49 | 20.7 | -- | -- | -- | -- |
| 905.24 | 1.4 | 8.88 | -- | -- | 2.24 | -- | -- | 0.853 | -- | 31.2 | 1096 | 11.4 | 2.47 |
| 1348.66 | 1.71 | 8.75 | -- | -- | -- | -- | -- | 1.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 437.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 439.01 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 16 | 447.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 17 | 447.97 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 30 | 449.52 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 38 | 450.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 42 | 450.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 44 | 450.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 49 | 450.66 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 53 | 451.17 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 58 | 451.53 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 172 | 453.84 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 20 |
| 178 | 454.50 | temperature | 30 | 1440 | > th | dose dependent | sin | 5 | NA |
| 181 | 454.63 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 20 |
| 207 | 455.51 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 241 | 456.04 | temperature | 30 | 14400 | > th | dose dependent | sin | 11 | NA |
| 244 | 456.24 | temperature | 30 | 14400 | > th | dose independent | sin | 11 | NA |
| 261 | 457.21 | temperature | 30 | 1440 | < th | dose independent | sin | 9 | NA |
| 266 | 457.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 332 | 459.08 | temperature | 30 | 1440 | > th | dose independent | sin | 9 | NA |
| 340 | 459.30 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 345 | 459.41 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 392 | 460.29 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 393 | 460.29 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 11 |
| 547 | 460.73 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 588 | 461.07 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 723 | 461.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 744 | 461.40 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 796 | 461.74 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 804 | 461.85 | temperature | 30 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 890 | 462.50 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 986 | 463.12 | temperature | 25 | 14400 | > th | dose independent | rect. | 20 | 1 |