BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0587500 Os04g0587500|AK060241
         (91 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19260.1  | chr1:6657260-6659569 REVERSE LENGTH=770             86   5e-18
AT3G29765.1  | chr3:11595467-11597077 REVERSE LENGTH=537           84   2e-17
AT2G06541.1  | chr2:2598222-2600326 REVERSE LENGTH=593             65   6e-12

>AT1G19260.1 | chr1:6657260-6659569 REVERSE LENGTH=770
          Length = 769

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 51/77 (66%)

Query: 1   HEIVYXXXXXXXXXPVATASVERIFSAMNYVKNKLRNRMGDQYLNDCLVTFIEREMFLKV 60
           H +VY         PVATA+VER FSAMN+VK  LRNR+GD +L+DCLV FIE++    V
Sbjct: 691 HPLVYRLLKVSLILPVATATVERCFSAMNFVKTTLRNRIGDMFLSDCLVCFIEKQALNTV 750

Query: 61  KECDIINRFQAMKERRI 77
               +I RFQ M ERR+
Sbjct: 751 TNESVIKRFQDMSERRV 767



>AT3G29765.1 | chr3:11595467-11597077 REVERSE LENGTH=537
          Length = 536

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 50/77 (64%)

Query: 1   HEIVYXXXXXXXXXPVATASVERIFSAMNYVKNKLRNRMGDQYLNDCLVTFIEREMFLKV 60
           H +VY         PVATA+V R FSAMN+VK  LRNR GD +L+DCLV FIE+++   V
Sbjct: 458 HPLVYRLLKLSLILPVATATVVRCFSAMNFVKTTLRNRFGDVFLSDCLVCFIEKQVLNTV 517

Query: 61  KECDIINRFQAMKERRI 77
               +I RFQ M ERR+
Sbjct: 518 TNESVIKRFQDMSERRV 534



>AT2G06541.1 | chr2:2598222-2600326 REVERSE LENGTH=593
          Length = 592

 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 1   HEIVYXXXXXXXXXPVATASVERIFSAMNYVKNKLRNRMGDQYLNDCLVTFIEREMFLKV 60
           H  VY         P+ATA+VER FSA   VK  LRNR+ DQ+LND +V  ++RE+F  V
Sbjct: 515 HPQVYRLLKVVLTLPIATATVERCFSA-TVVKTTLRNRISDQFLNDYVVCLVKRELFDTV 573

Query: 61  KECDIINRFQAMKERRI 77
               +I RFQ+M+ R I
Sbjct: 574 INKVVIKRFQSMENRMI 590



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,471,708
Number of extensions: 44465
Number of successful extensions: 100
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 3
Length of query: 91
Length of database: 11,106,569
Length adjustment: 62
Effective length of query: 29
Effective length of database: 9,406,777
Effective search space: 272796533
Effective search space used: 272796533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)