Os04g0587400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF250 domain containing protein.
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Os04g0587400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF250 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.62 | 0.624 | 9.94 | 3.84 | 3.01 | -1.37 | -1.72 | 1.07 | 1.2 | 22.3 | 10.03 | 1452 | -- | -- |
| 179.16 | 0.623 | 9.94 | 3.81 | 2.99 | -1.38 | -1.6 | -- | 1.21 | 22.3 | 10.06 | 1451 | -- | -- |
| 188.69 | 0.64 | 9.94 | 3.84 | 3.01 | -1.37 | -- | 0.967 | 1.2 | 22.3 | 10.04 | 1453 | -- | -- |
| 190.42 | 0.643 | 9.94 | 3.79 | 3.02 | -1.36 | -- | -- | 1.16 | 22.4 | 10.03 | 1446 | -- | -- |
| 294.15 | 0.803 | 9.95 | 3.3 | -- | -2.08 | -- | 1.78 | 0.87 | -- | 2.91 | 1600 | -- | -- |
| 230.1 | 0.711 | 10.1 | 3.24 | 2.99 | -- | -1.91 | -- | 0.73 | 22.3 | -- | -- | -- | -- |
| 244.83 | 0.733 | 10.1 | 3.31 | 3 | -- | -- | -- | 0.736 | 22.3 | -- | -- | -- | -- |
| 314.75 | 0.83 | 9.95 | 3.3 | -- | -2.06 | -- | -- | 0.865 | -- | 2.91 | 1600 | -- | -- |
| 349.97 | 0.871 | 10.2 | -- | 2.99 | -2.3 | -- | -- | 0.237 | 22 | 64.88 | 23669 | -- | -- |
| 793.35 | 1.32 | 9.97 | 3.36 | -- | -- | -- | -- | 0.743 | -- | -- | -- | -- | -- |
| 534.25 | 1.08 | 10.1 | -- | 3.02 | -- | -- | -- | 0.366 | 22.3 | -- | -- | -- | -- |
| 601.1 | 1.15 | 10 | -- | -- | -2.09 | -- | -- | 0.501 | -- | 2.91 | 1600 | -- | -- |
| 1090.99 | 1.54 | 10.1 | -- | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.62 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 18 | 175.56 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 25 | 176.19 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 26 | 176.20 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 27 | 176.21 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 28 | 176.23 | radiation | 10 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 43 | 176.33 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 47 | 176.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 53 | 176.78 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 67 | 176.84 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 165 | 177.07 | radiation | 10 | 1440 | > th | dose independent | sin | 3 | NA |
| 168 | 177.17 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 171 | 177.28 | radiation | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 195 | 177.52 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 202 | 177.72 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 219 | 177.87 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 226 | 177.96 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 227 | 177.97 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 232 | 178.00 | radiation | 20 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 236 | 178.05 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 252 | 178.10 | radiation | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 254 | 178.14 | radiation | 20 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 268 | 178.22 | radiation | 20 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 271 | 178.24 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 286 | 178.29 | radiation | 20 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 323 | 178.37 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 410 | 178.48 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 511 | 178.72 | radiation | 20 | 1440 | < th | dose dependent | sin | 23 | NA |
| 650 | 178.97 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 674 | 179.10 | humidity | 80 | 1440 | < th | dose dependent | sin | 8 | NA |
| 773 | 179.33 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 824 | 179.40 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 828 | 179.41 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 849 | 179.45 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 853 | 179.47 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 864 | 179.52 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 16 |
| 867 | 179.53 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 12 |
| 872 | 179.54 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 889 | 179.57 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 18 |
| 894 | 179.58 | radiation | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 897 | 179.58 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 983 | 179.72 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 984 | 179.74 | radiation | 30 | 1440 | < th | dose independent | sin | 12 | NA |