Os04g0587300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Purine permease-like protein.
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Os04g0587300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Purine permease-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 357.09 | 0.888 | 6.31 | 6.37 | 3.43 | -2.27 | 1.01 | 0.1 | 2.2 | 21.9 | 10.03 | 1443 | -- | -- |
| 357.1 | 0.88 | 6.31 | 6.36 | 3.44 | -2.27 | 1.01 | -- | 2.19 | 21.9 | 10.04 | 1443 | -- | -- |
| 361.01 | 0.885 | 6.31 | 6.34 | 3.44 | -2.27 | -- | 0.142 | 2.19 | 22 | 10.01 | 1443 | -- | -- |
| 361.03 | 0.885 | 6.31 | 6.32 | 3.44 | -2.26 | -- | -- | 2.19 | 22 | 10.01 | 1443 | -- | -- |
| 656.71 | 1.2 | 6.34 | 5.56 | -- | -2.19 | -- | -0.124 | 1.67 | -- | 3.49 | 1593 | -- | -- |
| 504.24 | 1.05 | 6.46 | 5.63 | 3.39 | -- | 0.714 | -- | 1.51 | 21.9 | -- | -- | -- | -- |
| 506.2 | 1.05 | 6.47 | 5.6 | 3.38 | -- | -- | -- | 1.51 | 21.9 | -- | -- | -- | -- |
| 633.6 | 1.18 | 6.35 | 5.64 | -- | -2.23 | -- | -- | 1.59 | -- | 1.815 | 1569 | -- | -- |
| 1138.58 | 1.57 | 6.51 | -- | 3.14 | -2.47 | -- | -- | 1.52 | 21.8 | 29.9 | 7494 | -- | -- |
| 1190.89 | 1.61 | 6.37 | 5.64 | -- | -- | -- | -- | 1.51 | -- | -- | -- | -- | -- |
| 1333.89 | 1.71 | 6.61 | -- | 3.4 | -- | -- | -- | 0.883 | 22 | -- | -- | -- | -- |
| 1471.28 | 1.79 | 6.5 | -- | -- | -2.23 | -- | -- | 0.968 | -- | 1.815 | 1569 | -- | -- |
| 2030.22 | 2.1 | 6.52 | -- | -- | -- | -- | -- | 0.881 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 352.84 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 5 | 355.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 6 | 355.43 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 11 | 357.07 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 23 | 357.19 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 95 | 358.47 | radiation | 10 | 1440 | > th | dose independent | sin | 13 | NA |
| 97 | 358.98 | humidity | 70 | 1440 | > th | dose independent | sin | 15 | NA |
| 108 | 360.66 | humidity | 70 | 1440 | < th | dose independent | sin | 15 | NA |
| 135 | 361.91 | humidity | 80 | 1440 | < th | dose dependent | sin | 14 | NA |
| 138 | 361.97 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 139 | 361.99 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 144 | 362.03 | radiation | 10 | 1440 | > th | dose independent | sin | 1 | NA |
| 158 | 362.67 | radiation | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 273 | 363.41 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 286 | 363.49 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 301 | 363.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 305 | 363.53 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 309 | 363.57 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 310 | 363.61 | temperature | 30 | 1440 | > th | dose dependent | sin | 16 | NA |
| 319 | 363.75 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 339 | 363.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 346 | 363.97 | radiation | 1 | 1440 | > th | dose dependent | sin | 13 | NA |
| 390 | 364.29 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 16 |
| 394 | 364.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 439 | 364.51 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 450 | 364.52 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 467 | 364.62 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 567 | 364.73 | radiation | 30 | 1440 | < th | dose dependent | rect. | 13 | 21 |
| 596 | 364.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 598 | 364.94 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 657 | 365.50 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 661 | 365.58 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 701 | 365.74 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 739 | 365.89 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 16 |
| 761 | 365.93 | radiation | 30 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 765 | 365.95 | radiation | 30 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 791 | 366.02 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 799 | 366.05 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 803 | 366.07 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 875 | 366.31 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 888 | 366.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 925 | 366.55 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 933 | 366.57 | radiation | 30 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 980 | 366.66 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 994 | 366.69 | radiation | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |