Os04g0584800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTP1/OBG domain containing protein.
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Os04g0584800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GTP1/OBG domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.03 | 0.297 | 9.94 | -0.591 | 0.635 | -0.477 | -0.47 | 0.667 | -0.404 | 3.95 | 23.13 | 1338 | -- | -- |
| 40.37 | 0.296 | 9.93 | -0.541 | 0.636 | -0.51 | -0.523 | -- | -0.398 | 4.05 | 22.69 | 2252 | -- | -- |
| 40.59 | 0.297 | 9.94 | -0.588 | 0.627 | -0.445 | -- | 0.767 | -0.4 | 3.96 | 23.09 | 1199 | -- | -- |
| 41.09 | 0.299 | 9.93 | -0.558 | 0.628 | -0.543 | -- | -- | -0.393 | 4.01 | 21.8 | 2432 | -- | -- |
| 61.12 | 0.364 | 9.93 | -0.614 | -- | -0.586 | -- | 0.67 | -0.421 | -- | 26.37 | 1139 | -- | -- |
| 44.25 | 0.312 | 9.9 | -0.339 | 0.656 | -- | -0.561 | -- | -0.293 | 3.92 | -- | -- | -- | -- |
| 45.16 | 0.315 | 9.9 | -0.332 | 0.652 | -- | -- | -- | -0.29 | 3.87 | -- | -- | -- | -- |
| 61.76 | 0.366 | 9.94 | -0.505 | -- | -0.668 | -- | -- | -0.422 | -- | 26.19 | 1129 | -- | -- |
| 46.85 | 0.319 | 9.9 | -- | 0.713 | -0.311 | -- | -- | -0.29 | 4.16 | 34.9 | 468 | -- | -- |
| 68.48 | 0.387 | 9.9 | -0.305 | -- | -- | -- | -- | -0.273 | -- | -- | -- | -- | -- |
| 48.06 | 0.324 | 9.89 | -- | 0.645 | -- | -- | -- | -0.253 | 3.88 | -- | -- | -- | -- |
| 67.57 | 0.383 | 9.92 | -- | -- | -0.442 | -- | -- | -0.323 | -- | 26.2 | 1117 | -- | -- |
| 70.93 | 0.393 | 9.9 | -- | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 3 | 39.43 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 17 | 39.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 18 | 39.47 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 20 | 39.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 23 | 39.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 26 | 39.49 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 27 | 39.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 29 | 39.50 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 31 | 39.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 41 | 39.52 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 61 | 39.57 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 71 | 39.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 14 |
| 74 | 39.58 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 116 | 39.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 146 | 39.68 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 168 | 39.68 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 12 | 23 |
| 178 | 39.70 | radiation | 1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 183 | 39.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 226 | 39.74 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 249 | 39.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 337 | 39.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 459 | 39.90 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 489 | 39.91 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 23 |
| 543 | 39.93 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 548 | 39.94 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 586 | 39.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 596 | 39.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 597 | 39.96 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 621 | 39.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 688 | 39.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 746 | 40.02 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 883 | 40.08 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 19 | 14 |
| 892 | 40.09 | radiation | 1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 893 | 40.09 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 913 | 40.10 | radiation | 1 | 4320 | > th | dose independent | rect. | 7 | 1 |