BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0584800 Os04g0584800|AK102568
         (418 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65960.1  | chr5:26385413-26387197 FORWARD LENGTH=394          281   4e-76

>AT5G65960.1 | chr5:26385413-26387197 FORWARD LENGTH=394
          Length = 393

 Score =  281 bits (719), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 180/409 (44%), Positives = 239/409 (58%), Gaps = 23/409 (5%)

Query: 8   LEARXXXXXXXXXXXXKRTILSRLLAAEIPDTHDLSSGVLCQGWNIDTKYYSADLSVWTA 67
           +E+R            KRT+LSRLL+ E  D+ + SS     GW I+TKYY+AD+SV  +
Sbjct: 1   MESRPGVLVVGSSGVGKRTLLSRLLSVEFEDSSESSSQTEVHGWTINTKYYTADVSVCIS 60

Query: 68  HLGQGFSLDSLPHLDQLDALVMVFDMSDESSFLTLQNWVSSVDVQRFEILLCIGNKADLV 127
           H+   +SL +LP+   L ALVMVFD+S+ S+ + LQ+WVS  D+  F+ILLCIGNK D V
Sbjct: 61  HICDEYSLPNLPNSHPLVALVMVFDLSELSTLVALQDWVSHTDINSFDILLCIGNKVDRV 120

Query: 128 LGHGAHVEYRRRMQKIGESSTDPHPEYLDFGINXXXXXXXXXXXXPQIEIRDSASHWCIE 187
             H AH EYRRR+ K  + S D + +  DFGI+              ++IR +   WC E
Sbjct: 121 PHHLAHDEYRRRLLKASDPSRDLYSDIDDFGISETEGSSLLGSEDASLDIRGACLEWCSE 180

Query: 188 HNIEYVKACASNADFDKCLSVNGDSQGLERLLGALSAHMWPGMILKSGNRITVPSLVEKE 247
           +NIE+++ACASN DFDKCLSV+GDSQG+ERL GALSAHMWPGMILKSG+RI  P L + E
Sbjct: 181 NNIEFIEACASNPDFDKCLSVDGDSQGVERLFGALSAHMWPGMILKSGDRINEPVLPQGE 240

Query: 248 ESTDDESNYEFEYEVLSHGSDEQWEFIGESSTSRDLEGLNEDTATHDKTNQVVDADANSV 307
           E +++ES YE EYEVLS GS + W+ I E   S              +T+   DA  ++ 
Sbjct: 241 ELSEEESEYELEYEVLSAGSGDPWDNIEERWVSA------------SETHSHADAGGSTS 288

Query: 308 ASNPLPNGRMTE--TAEEKLVPQSHKSEVSNDMDNTQADASEKLQAGIPEGNKLFEDEHY 365
             N      M +    +E+L+P   + E+ ND D       + L     E  K +E    
Sbjct: 289 QENLHVENSMVKPNKVDEELLPSGSRLELQNDTDRAIVTDEKPLGT---ENEKCYE---- 341

Query: 366 GLDDLERLMSEIGNMRSNLRLMPDFQRXXXXXXXXXXXXXXF-GDNDEE 413
             +D+E+LMSEIGN+R NLRLMPDFQR              F GD D+E
Sbjct: 342 -FEDVEQLMSEIGNIRDNLRLMPDFQRREIAANLAMKMASMFGGDTDDE 389



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,749,583
Number of extensions: 365725
Number of successful extensions: 921
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 934
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 317
Effective length of database: 8,337,553
Effective search space: 2643004301
Effective search space used: 2643004301
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)