Os04g0582400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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Os04g0582400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 335.31 | 0.86 | 3.88 | -1.21 | 0.904 | 1.45 | 1.85 | -0.681 | -0.331 | 7.05 | 18.1 | 7340 | -- | -- |
| 335.39 | 0.853 | 3.86 | -1.1 | 0.905 | 1.58 | 1.84 | -- | -0.344 | 7.05 | 17.1 | 8770 | -- | -- |
| 342.74 | 0.862 | 3.9 | -1.2 | 0.909 | 1.49 | -- | -0.634 | -0.382 | 7.71 | 18 | 8452 | -- | -- |
| 342.7 | 0.862 | 3.86 | -1.06 | 0.909 | 1.58 | -- | -- | -0.343 | 7.76 | 17.21 | 8457 | -- | -- |
| 386.48 | 0.916 | 3.89 | -1.11 | -- | 1.58 | -- | -0.177 | -0.359 | -- | 17.32 | 8598 | -- | -- |
| 390.46 | 0.926 | 3.74 | -0.193 | 0.91 | -- | 1.94 | -- | 0.204 | 6.84 | -- | -- | -- | -- |
| 399.02 | 0.935 | 3.74 | -0.154 | 0.919 | -- | -- | -- | 0.201 | 7.4 | -- | -- | -- | -- |
| 386.49 | 0.916 | 3.88 | -1.05 | -- | 1.59 | -- | -- | -0.337 | -- | 17.2 | 8603 | -- | -- |
| 358.71 | 0.882 | 3.81 | -- | 0.902 | 0.98 | -- | -- | -0.106 | 7.79 | 22.73 | 8426 | -- | -- |
| 444.04 | 0.985 | 3.76 | -0.139 | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
| 399.65 | 0.935 | 3.73 | -- | 0.918 | -- | -- | -- | 0.219 | 7.41 | -- | -- | -- | -- |
| 401.94 | 0.934 | 3.83 | -- | -- | 0.961 | -- | -- | -0.0862 | -- | 24.89 | 8586 | -- | -- |
| 444.55 | 0.984 | 3.76 | -- | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 330.08 | temperature | 20 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 2 | 330.33 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 16 |
| 24 | 330.44 | temperature | 20 | 14400 | < th | dose dependent | sin | 7 | NA |
| 29 | 330.45 | temperature | 20 | 14400 | < th | dose dependent | rect. | 13 | 17 |
| 34 | 330.47 | temperature | 20 | 14400 | < th | dose dependent | rect. | 16 | 14 |
| 59 | 330.54 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 128 | 330.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 228 | 330.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 233 | 331.01 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 245 | 331.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 267 | 331.24 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 275 | 331.27 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 313 | 331.67 | temperature | 20 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 316 | 331.70 | temperature | 30 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 325 | 331.76 | temperature | 10 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 326 | 331.77 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 18 |
| 327 | 331.77 | temperature | 30 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 338 | 331.80 | temperature | 10 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 368 | 331.87 | temperature | 30 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 372 | 331.89 | temperature | 10 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 407 | 331.98 | temperature | 30 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 439 | 332.06 | temperature | 15 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 462 | 332.12 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 489 | 332.23 | temperature | 20 | 14400 | < th | dose independent | sin | 5 | NA |
| 507 | 332.27 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 519 | 332.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 522 | 332.32 | temperature | 20 | 14400 | > th | dose independent | sin | 5 | NA |
| 609 | 332.59 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 7 |
| 640 | 332.66 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 8 |
| 753 | 332.95 | temperature | 20 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 850 | 333.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 874 | 333.24 | temperature | 15 | 14400 | > th | dose dependent | sin | 11 | NA |
| 902 | 333.29 | temperature | 20 | 14400 | > th | dose independent | rect. | 12 | 19 |
| 929 | 333.34 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 965 | 333.38 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 968 | 333.38 | temperature | 30 | 14400 | < th | dose dependent | sin | 10 | NA |