BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0582400 Os04g0582400|Os04g0582400
(596 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263 255 4e-68
ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241 167 2e-41
ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112 66 6e-11
>AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263
Length = 1262
Score = 255 bits (652), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 191/322 (59%), Gaps = 1/322 (0%)
Query: 227 KALYGLRQAPRAWNSKLEATLLSLGFRRNDCEHAVYVRGNTSARLLVGVYVDDLIITGTK 286
K++YGL+QA R W K TL+ GF ++ +H +++ + L V VYVDD+II
Sbjct: 234 KSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNN 293
Query: 287 EDEIVRFKGEMKALFKMSDLGLLSFYLGIEVEQVAGSIRLSQAAYARRILERAGMLGCNP 346
+ + K ++K+ FK+ DLG L ++LG+E+ + A I + Q YA +L+ G+LGC P
Sbjct: 294 DAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKP 353
Query: 347 SATPMEQRLKLSKTSAAASVNPTWYRGIVGCLRYLVHTRPDIAFSVGYVSRFMEAPTTEH 406
S+ PM+ + S S V+ YR ++G L YL TR DI+F+V +S+F EAP H
Sbjct: 354 SSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAH 413
Query: 407 EAAVKRILRYIAGTTEFGCHYHQSSSPVQLVGYSDADMAGDPDTRKSTTGVVFFLGTSPV 466
+ AV +IL YI GT G Y S + +QL +SDA DTR+ST G FLGTS +
Sbjct: 414 QQAVMKILHYIKGTVGQGLFY-SSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLI 472
Query: 467 SWQSVKQKVVALSSCEAEYIAATTAACQGVWLSQLLGEINQEEPDAFKLLIDNKSAIALS 526
SW+S KQ+VV+ SS EAEY A + A + +WL+Q E+ L DN +AI ++
Sbjct: 473 SWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIA 532
Query: 527 KNPVFHERSKHIATRYHYIRER 548
N VFHER+KHI + H +RER
Sbjct: 533 TNAVFHERTKHIESDCHSVRER 554
>ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241
Length = 240
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 2/225 (0%)
Query: 275 VYVDDLIITGTKEDEIVRFKGEMKALFKMSDLGLLSFYLGIEVEQVAGSIRLSQAAYARR 334
+YVDD+++TG+ + ++ + F M DLG + ++LGI+++ + LSQ YA +
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 335 ILERAGMLGCNPSATPMEQRLKLSKTSAAASVNPTWYRGIVGCLRYLVHTRPDIAFSVGY 394
IL AGML C P +TP+ +L S S A +P+ +R IVG L+YL TRPDI+++V
Sbjct: 65 ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 395 VSRFMEAPTTEHEAAVKRILRYIAGTTEFGCHYHQSSSPVQLVGYSDADMAGDPDTRKST 454
V + M PT +KR+LRY+ GT G + H++S + + + D+D AG TR+ST
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSK-LNVQAFCDSDWAGCTSTRRST 182
Query: 455 TGVVFFLGTSPVSWQSVKQKVVALSSCEAEYIAATTAACQGVWLS 499
TG FLG + +SW + +Q V+ SS E EY A A + W S
Sbjct: 183 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227
>ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112
Length = 111
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 380 YLVHTRPDIAFSVGYVSRFMEAPTTEHEAAVKRILRYIAGTTEFGCHYHQSSSPVQLVGY 439
YL TRPD+ F+V +S+F A T AV ++L Y+ GT G Y ++S +QL +
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFY-SATSDLQLKAF 60
Query: 440 SDADMAGDPDTRKSTTGV-----VFFLG 462
+D+D A PDTR+S TG ++FLG
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLVPLWFLG 88
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,138,950
Number of extensions: 358105
Number of successful extensions: 804
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 3
Length of query: 596
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 492
Effective length of database: 8,255,305
Effective search space: 4061610060
Effective search space used: 4061610060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)