FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0581800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.94 (0.0883) R2 : 0.497
β1 : -2.78 (0.279) R2dD : 0.202 R2D : 0.0672
β2 : 1.52 (0.142) R2dC : 0.127 R2C : -0.0592
β3 : 7.3 (0.967) R2dE : 1.12 R2E : -0.834
β4 : -2.93 (0.592) R2dD*C : 0.0273 R2D*C : -0.161
β5 : 20.6 (2.31) R2dD*E : 1.52 R2D*E : -1.6
γ1 : -0.227 (0.132) R2dN8 : 0.00512 R2N8 : -0.17
σ : 1.08
deviance : 525.78
__
_____
C
peak time of C : 15.1
E
wheather : radiation
threshold : 0.9439
memory length : 4817
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.03
open length of G : 9.97

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
525.78 1.08 4.94 -2.78 1.52 7.3 -2.93 20.6 -0.227 15.1 0.9439 4817 7.03 9.97
617.01 1.17 4.31 -3.05 1.35 1.1 -2.56 -- -0.104 15 9.094 408 7.45 10.2
546.95 1.09 4.9 -2.9 1.48 7.34 -- 20.9 -0.249 15 1.003 5249 7.05 9.93
634.24 1.18 4.3 -3.06 1.35 1.55 -- -- -0.0634 14.8 2.523e-05 330 7.51 10.6
666.89 1.2 4.92 -2.96 -- 7.36 -- 21.1 -0.293 -- 0.9733 5581 7.02 9.98
629.23 1.18 4.31 -3.06 1.46 -- -2.65 -- -0.0956 15 -- -- -- --
652.75 1.2 4.32 -3.12 1.45 -- -- -- -0.111 15 -- -- -- --
623.71 1.16 4.29 -2.92 -- 2.72 -- -- 0.0143 -- 101 984 0.233 16
813.56 1.33 4.27 -- 1.32 2.4 -- -- 0.252 14.9 0.17 3027 8.23 9.22
773.77 1.3 4.32 -3.18 -- -- -- -- -0.149 -- -- -- -- --
909.41 1.41 4.24 -- 1.51 -- -- -- 0.236 15 -- -- -- --
779.53 1.3 4.26 -- -- 2.22 -- -- 0.528 -- 0.06817 46329 7.82 10
1040.94 1.51 4.24 -- -- -- -- -- 0.204 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 519.45 humidity 80 43200 > th dose independent rect. 23 18
2 520.62 humidity 80 43200 < th dose independent rect. 23 18
3 520.80 humidity 80 43200 > th dose independent rect. 24 16
7 522.63 humidity 80 43200 < th dose independent rect. 24 16
16 525.80 radiation 1 14400 < th dose dependent rect. 7 5
22 526.87 radiation 1 14400 > th dose independent rect. 7 8
24 527.28 radiation 1 14400 < th dose independent rect. 7 8
25 527.28 radiation 1 14400 < th dose dependent rect. 7 9
26 527.44 temperature 20 43200 < th dose dependent rect. 14 1
33 528.33 temperature 20 43200 < th dose dependent rect. 11 5
43 528.66 radiation 1 14400 > th dose independent rect. 9 3
45 528.74 temperature 20 43200 < th dose dependent rect. 10 9
47 528.88 temperature 20 43200 < th dose dependent rect. 13 6
68 529.23 temperature 15 14400 < th dose independent rect. 5 6
77 529.44 temperature 20 43200 < th dose dependent rect. 18 1
81 529.56 temperature 15 14400 > th dose independent rect. 6 8
100 530.05 temperature 15 14400 < th dose independent rect. 5 22
114 530.30 temperature 15 14400 < th dose independent sin 1 NA
115 530.30 radiation 1 4320 > th dose independent rect. 9 1
130 530.53 temperature 15 14400 > th dose independent rect. 9 18
143 530.78 radiation 1 14400 < th dose independent rect. 9 3
159 531.12 temperature 15 14400 < th dose independent rect. 6 4
161 531.12 radiation 1 43200 < th dose dependent rect. 9 1
169 531.33 temperature 15 14400 > th dose independent rect. 7 4
176 531.36 temperature 15 14400 < th dose independent rect. 15 12
177 531.37 temperature 15 14400 < th dose independent rect. 24 1
180 531.40 temperature 20 43200 > th dose independent rect. 14 1
184 531.42 temperature 20 43200 < th dose independent rect. 14 1
189 531.53 temperature 15 14400 < th dose independent rect. 21 5
194 531.57 temperature 15 14400 < th dose independent rect. 19 7
209 531.74 temperature 15 14400 < th dose independent rect. 22 3
229 532.00 temperature 15 14400 > th dose independent sin 23 NA
232 532.00 temperature 15 14400 < th dose independent rect. 24 23
245 532.22 temperature 15 14400 < th dose independent rect. 21 23
246 532.27 humidity 80 43200 > th dose independent sin 4 NA
248 532.28 temperature 15 43200 < th dose dependent rect. 23 1
255 532.34 temperature 15 14400 > th dose independent rect. 21 4
265 532.44 temperature 15 14400 < th dose independent sin 16 NA
273 532.48 temperature 15 14400 < th dose independent rect. 10 23
275 532.49 temperature 15 43200 > th dose independent rect. 20 10
277 532.50 temperature 15 14400 > th dose independent rect. 19 6
284 532.54 temperature 15 14400 < th dose independent rect. 14 23
285 532.55 temperature 15 14400 < th dose independent no NA NA
295 532.59 temperature 15 43200 > th dose independent rect. 24 13
304 532.61 temperature 15 14400 < th dose independent rect. 19 23
312 532.66 temperature 15 43200 > th dose independent rect. 2 3
314 532.67 temperature 15 43200 > th dose independent rect. 24 7
351 532.76 temperature 15 43200 > th dose independent rect. 20 16
380 532.85 temperature 15 43200 > th dose independent sin 7 NA
454 533.08 temperature 15 43200 < th dose independent rect. 2 1
475 533.14 temperature 15 14400 > th dose independent rect. 15 12
506 533.22 temperature 15 14400 < th dose independent rect. 24 20
521 533.28 temperature 15 14400 > th dose independent sin 18 NA
547 533.36 temperature 15 43200 < th dose independent rect. 1 4
550 533.36 humidity 50 43200 < th dose dependent rect. 9 1
558 533.39 humidity 70 43200 > th dose dependent rect. 21 18
591 533.49 temperature 15 43200 < th dose independent rect. 21 9
748 534.04 temperature 15 43200 < th dose independent rect. 24 12
793 534.18 temperature 15 43200 > th dose independent rect. 23 23
823 534.26 temperature 15 43200 < th dose independent sin 8 NA
832 534.28 radiation 1 1440 < th dose independent rect. 10 2
834 534.28 radiation 1 1440 < th dose dependent rect. 10 2
888 534.41 temperature 15 43200 > th dose independent no NA NA
952 534.57 temperature 15 43200 > th dose independent rect. 11 1
974 534.63 temperature 15 43200 > th dose independent rect. 2 23