BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0581800 Os04g0581800|AK107739
(122 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27590.2 | chr4:13771224-13772594 FORWARD LENGTH=333 117 2e-27
AT1G06330.1 | chr1:1931671-1932266 REVERSE LENGTH=160 53 4e-08
AT3G56891.1 | chr3:21064199-21064922 REVERSE LENGTH=167 52 5e-08
AT2G18196.1 | chr2:7920793-7922268 REVERSE LENGTH=179 52 5e-08
AT1G29100.1 | chr1:10169084-10169619 FORWARD LENGTH=142 52 6e-08
AT4G10465.1 | chr4:6473582-6475137 FORWARD LENGTH=184 50 4e-07
AT2G37390.1 | chr2:15694300-15695461 FORWARD LENGTH=260 48 1e-06
AT4G39700.1 | chr4:18424265-18424906 FORWARD LENGTH=159 47 2e-06
>AT4G27590.2 | chr4:13771224-13772594 FORWARD LENGTH=333
Length = 332
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 61/80 (76%)
Query: 1 MGDMQIVLAAGKIEAQYVEMKVPLYSYGCEKKIKKALSHLRGIHSVQVDYQQQKVTVWGI 60
MGD+QIV K+EAQYVEM VPLYSYGCEKK+K+ALSHL+GI+SV+VDY QKVTVWGI
Sbjct: 1 MGDLQIVPVYNKVEAQYVEMMVPLYSYGCEKKVKRALSHLKGIYSVKVDYYNQKVTVWGI 60
Query: 61 CNRDDVLXXXXXXXXXXXFW 80
CN+ DVL FW
Sbjct: 61 CNKLDVLAMVKKKRKEARFW 80
>AT1G06330.1 | chr1:1931671-1932266 REVERSE LENGTH=160
Length = 159
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 8 LAAGKIEAQYVEMKVPLYSYGCEKKIKKALSHLRGIHSVQVDYQQQKVTVWGICNRDDVL 67
L I+ Q +EM+V + GCE ++K AL +RG+ +V++D QQKVTV G ++ VL
Sbjct: 3 LTLNLIQLQTIEMRVHMDCVGCESRVKNALQKMRGVDAVEIDMVQQKVTVTGYADQKKVL 62
Query: 68 XXXXXXXXXXXFW 80
W
Sbjct: 63 KKVRKTGRRAELW 75
>AT3G56891.1 | chr3:21064199-21064922 REVERSE LENGTH=167
Length = 166
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 18 VEMKVPLYSYGCEKKIKKALSHLRGIHSVQVDYQQQKVTVWGICNRDDVLXXXXXXXXXX 77
VE+ V + GCEKK+++A+S L G+ +V++D +QKVTV G +R++VL
Sbjct: 18 VELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGRTA 77
Query: 78 XFW 80
+W
Sbjct: 78 EYW 80
>AT2G18196.1 | chr2:7920793-7922268 REVERSE LENGTH=179
Length = 178
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 10 AGKIEAQYVEMKVPLYSYGCEKKIKKALSHLRGIHSVQVDYQQQKVTVWGICNRDDVLXX 69
A + Q +++KV + GCE+ +K A+ LRG+ SV+V+ + ++VTV G R VL
Sbjct: 40 ARPLSLQTIDLKVRMCCSGCERVVKHAIYKLRGVDSVEVNLEMERVTVVGYVERKKVLKA 99
Query: 70 XXXXXXXXXFWGADQPDLGEDSMPADARKHYLQAFTAYRFRKSWK 114
FW PD+ +D HY + T FR+S+
Sbjct: 100 VRRAGKRAEFW--PYPDMPRYFTSSD---HYFKD-TTREFRESYN 138
>AT1G29100.1 | chr1:10169084-10169619 FORWARD LENGTH=142
Length = 141
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 20 MKVPLYSYGCEKKIKKALSHLRGIHSVQVDYQQQKVTVWGICNRDDVL 67
M+VP+ GCE K++KAL + G+H VQ+D +QQ+VTV G + VL
Sbjct: 1 MEVPMDCPGCENKVRKALEKMNGVHDVQIDIKQQRVTVTGSAEQKKVL 48
>AT4G10465.1 | chr4:6473582-6475137 FORWARD LENGTH=184
Length = 183
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 13 IEAQYVEMKVPLYSYGCEKKIKKALSHLRGIHSVQVDYQQQKVTVWGICNRDDVLXXXXX 72
+ Q VE+KV + GC + ++ A+S LRG+ SV+VD + +V V G +R+ VL
Sbjct: 48 LSLQTVELKVRMCCTGCVRIVRNAISKLRGVDSVEVDKELGRVRVVGYVDRNKVLKAVRR 107
Query: 73 XXXXXXFWGADQPDL---GEDSMPADARKHYLQAFTAYR 108
F +P L + D K + +++ YR
Sbjct: 108 AGKRAEFSPYPEPPLYFTSTQNYFVDPSKEFKESYNYYR 146
>AT2G37390.1 | chr2:15694300-15695461 FORWARD LENGTH=260
Length = 259
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 9 AAGKIEAQYVEMKVPLYSYGCEKKIKKALSHLRGIHSVQVDYQQQKVTVWG 59
G + Q V +KV L+ GCE K++K L+ ++G+ S +D+ +KVTV G
Sbjct: 174 TCGDTDQQVVVLKVSLHCRGCEGKVRKHLARMQGVTSFNIDFAAKKVTVTG 224
>AT4G39700.1 | chr4:18424265-18424906 FORWARD LENGTH=159
Length = 158
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 12 KIEAQYVEMKVPLYSYGCEKKIKKALSHLRGIHSVQVDYQQQKVTVWGICNRDDVL 67
K + Q VE+KV + GC KIK +LS L+G+ +V+++ +QQKVTV G + VL
Sbjct: 28 KKQFQTVELKVRMDCDGCVLKIKNSLSSLKGVKTVEINKKQQKVTVSGYADASKVL 83
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,375,534
Number of extensions: 75680
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 10
Length of query: 122
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 36
Effective length of database: 8,748,793
Effective search space: 314956548
Effective search space used: 314956548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)