Os04g0578000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 1-aminocyclopropane-1-carboxylate synthase (EC 4.4.1.14) (Fragment).
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Os04g0578000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 1-aminocyclopropane-1-carboxylate synthase (EC 4.4.1.14) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 447.75 | 0.994 | 3.98 | -0.571 | 1.11 | 1.87 | 0.319 | -7.06 | 0.215 | 4.52 | 30.5 | 3977 | -- | -- |
| 449.78 | 0.988 | 3.86 | 0.516 | 1.13 | 1.11 | 0.35 | -- | 0.215 | 4.34 | 32.73 | 3211 | -- | -- |
| 447.99 | 0.986 | 3.98 | -0.568 | 1.12 | 1.86 | -- | -7 | 0.214 | 4.51 | 30.5 | 4005 | -- | -- |
| 449.83 | 0.988 | 3.86 | 0.509 | 1.11 | 1.08 | -- | -- | 0.2 | 4.48 | 32.8 | 3169 | -- | -- |
| 514.03 | 1.06 | 3.98 | -0.455 | -- | 1.9 | -- | -6.34 | 0.257 | -- | 30.5 | 3977 | -- | -- |
| 483.42 | 1.03 | 3.9 | 0.74 | 1.17 | -- | 0.425 | -- | 0.0301 | 4.26 | -- | -- | -- | -- |
| 483.92 | 1.03 | 3.9 | 0.735 | 1.17 | -- | -- | -- | 0.0278 | 4.26 | -- | -- | -- | -- |
| 516.01 | 1.06 | 3.87 | 0.512 | -- | 1.12 | -- | -- | 0.214 | -- | 32.7 | 3091 | -- | -- |
| 456.05 | 0.995 | 3.87 | -- | 1.11 | 1.12 | -- | -- | 0.159 | 4.45 | 32.76 | 3120 | -- | -- |
| 557.97 | 1.1 | 3.91 | 0.782 | -- | -- | -- | -- | 0.0589 | -- | -- | -- | -- | -- |
| 498.17 | 1.04 | 3.92 | -- | 1.19 | -- | -- | -- | -0.0541 | 4.25 | -- | -- | -- | -- |
| 522.72 | 1.06 | 3.88 | -- | -- | 1.2 | -- | -- | 0.201 | -- | 32.8 | 3071 | -- | -- |
| 574.11 | 1.12 | 3.93 | -- | -- | -- | -- | -- | -0.0279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 438.81 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 15 | 439.17 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 16 | 439.22 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 19 | 439.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 20 | 439.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 28 | 440.30 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 31 | 440.47 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 59 | 440.54 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 139 | 443.39 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 165 | 444.51 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 168 | 444.62 | temperature | 30 | 4320 | > th | dose dependent | sin | 9 | NA |
| 233 | 445.74 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 15 |
| 236 | 445.94 | temperature | 30 | 4320 | > th | dose independent | sin | 10 | NA |
| 273 | 446.75 | temperature | 30 | 4320 | < th | dose independent | sin | 10 | NA |
| 274 | 446.76 | humidity | 80 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 282 | 447.07 | humidity | 90 | 270 | < th | dose independent | rect. | 22 | 15 |
| 321 | 447.40 | wind | 1 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 327 | 447.58 | humidity | 90 | 270 | < th | dose independent | sin | 6 | NA |
| 329 | 447.67 | humidity | 60 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 331 | 447.70 | temperature | 20 | 90 | > th | dose independent | rect. | 14 | 18 |
| 336 | 447.78 | humidity | 90 | 270 | > th | dose independent | sin | 6 | NA |
| 357 | 448.01 | humidity | 80 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 361 | 448.08 | humidity | 60 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 391 | 448.18 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 12 |
| 399 | 448.22 | humidity | 90 | 270 | < th | dose independent | rect. | 20 | 17 |
| 416 | 448.43 | humidity | 90 | 10 | < th | dose independent | rect. | 23 | 16 |
| 418 | 448.45 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 424 | 448.51 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 431 | 448.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 433 | 448.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 435 | 448.61 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 465 | 448.75 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 469 | 448.77 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 8 |
| 475 | 448.82 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 476 | 448.83 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 498 | 448.89 | radiation | 20 | 10 | > th | dose independent | rect. | 15 | 18 |
| 500 | 448.91 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 514 | 448.92 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 541 | 449.05 | wind | 1 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 542 | 449.06 | humidity | 80 | 270 | > th | dose dependent | sin | 7 | NA |
| 576 | 449.30 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 584 | 449.37 | humidity | 50 | 90 | > th | dose independent | rect. | 15 | 17 |
| 587 | 449.38 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 588 | 449.38 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 11 |
| 874 | 450.38 | humidity | 80 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 880 | 450.44 | humidity | 90 | 270 | > th | dose dependent | rect. | 8 | 22 |
| 885 | 450.47 | humidity | 90 | 270 | < th | dose independent | rect. | 1 | 12 |
| 887 | 450.52 | humidity | 90 | 270 | > th | dose independent | rect. | 3 | 2 |
| 927 | 450.91 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 9 |