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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0576300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pseudouridylate synthase TruB, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0216) R2 : 0.0044
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0644 (0.0454) R2dN8 : 0.00568 R2N8 : 0.0044
σ : 0.406
deviance : 75.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.44 0.397 2.61 1.77 0.132 -22.3 0.131 137 0.0705 8 994.7 751 -- --
430.31 0.966 2.87 -0.363 0.326 -18.4 -0.132 -- -0.0106 22.4 994.6 224 -- --
71.48 0.394 2.61 1.78 0.133 -22.4 -- 137 0.07 7.68 994.7 750 -- --
74.54 0.405 2.91 0.0122 0.143 0.125 -- -- 0.0641 7.12 995.1 179 -- --
72.43 0.396 2.61 1.8 -- -22.3 -- 137 0.0731 -- 994.7 748 -- --
74.53 0.405 2.91 0.0111 0.14 -- 0.117 -- 0.0641 7.35 -- -- -- --
74.57 0.404 2.91 0.0134 0.141 -- -- -- 0.0637 7.14 -- -- -- --
74.95 0.403 2.91 -0.000648 -- 0.347 -- -- 0.0728 -- 998.3 175 -- --
74.26 0.401 2.9 -- 0.149 0.169 -- -- 0.0855 7.09 1222 16 -- --
75.62 0.406 2.91 0.016 -- -- -- -- 0.0662 -- -- -- -- --
74.57 0.404 2.91 -- 0.141 -- -- -- 0.0622 7.14 -- -- -- --
74.95 0.403 2.91 -- -- 0.347 -- -- 0.0728 -- 998.3 175 -- --
75.63 0.406 2.91 -- -- -- -- -- 0.0644 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.22 temperature 25.0 90 > th dose dependent rect. 2 3
3 62.84 temperature 25.0 90 > th dose independent rect. 2 2
14 65.46 temperature 25.0 90 > th dose independent rect. 1 4
33 67.08 humidity 90.0 10 < th dose independent rect. 4 1
44 67.74 wind 1.0 30 > th dose dependent rect. 4 1
48 67.77 wind 1.0 30 > th dose independent rect. 4 1
49 67.80 wind 3.0 30 < th dose dependent rect. 2 1
50 67.80 atmosphere 1005.0 30 > th dose dependent rect. 2 1
52 67.83 humidity 80.0 30 > th dose independent rect. 2 1
53 67.83 atmosphere 1005.0 30 > th dose independent rect. 2 1
60 67.87 wind 3.0 30 < th dose independent rect. 2 1
61 67.88 humidity 70.0 30 > th dose dependent rect. 2 1
63 67.89 humidity 50.0 30 > th dose dependent rect. 2 1
70 67.92 temperature 10.0 30 > th dose independent rect. 2 1
72 67.92 temperature 30.0 30 < th dose independent rect. 2 1
73 67.92 humidity 50.0 30 > th dose independent rect. 2 1
78 67.92 atmosphere 1010.0 30 < th dose independent rect. 2 1
80 67.92 radiation 1.0 30 < th dose independent rect. 2 1
85 67.92 precipitation 0.1 30 < th dose independent rect. 2 1
86 67.92 temperature 10.0 30 > th dose independent rect. 3 23
87 67.92 radiation 1.0 30 < th dose dependent rect. 2 1
92 67.92 precipitation 0.1 30 < th dose dependent rect. 2 1
97 68.10 atmosphere 1005.0 30 > th dose dependent rect. 4 1
100 68.15 atmosphere 1015.0 30 < th dose dependent rect. 2 1
102 68.38 temperature 30.0 30 < th dose dependent rect. 2 1
106 68.51 atmosphere 1000.0 90 < th dose independent rect. 2 1
107 68.51 atmosphere 1000.0 10 < th dose independent rect. 3 1
117 68.51 atmosphere 1000.0 90 < th dose dependent rect. 2 1
118 68.51 atmosphere 1000.0 10 < th dose dependent rect. 3 1
138 68.66 wind 1.0 30 > th dose independent rect. 2 1
162 69.00 atmosphere 1005.0 30 > th dose dependent rect. 2 3
177 69.17 wind 1.0 10 > th dose independent rect. 5 23
213 69.35 atmosphere 1005.0 30 > th dose independent rect. 4 1
220 69.43 wind 3.0 30 < th dose independent rect. 4 1
223 69.44 wind 7.0 1440 < th dose independent rect. 5 1
225 69.44 temperature 10.0 1440 > th dose independent rect. 5 1
228 69.44 temperature 30.0 1440 < th dose independent rect. 5 1
232 69.44 humidity 80.0 30 > th dose independent rect. 4 1
233 69.44 humidity 50.0 1440 > th dose independent rect. 5 1
242 69.44 atmosphere 995.0 1440 > th dose independent rect. 5 1
243 69.44 atmosphere 1015.0 1440 < th dose independent rect. 5 1
244 69.44 radiation 20.0 1440 < th dose independent rect. 5 1
253 69.44 temperature 10.0 1440 > th dose independent rect. 6 23
257 69.45 temperature 10.0 30 > th dose independent rect. 4 1
259 69.45 temperature 30.0 30 < th dose independent rect. 4 1
260 69.45 humidity 50.0 30 > th dose independent rect. 4 1
264 69.45 atmosphere 1010.0 30 < th dose independent rect. 4 1
266 69.45 radiation 1.0 30 < th dose independent rect. 4 1
271 69.45 precipitation 0.1 30 < th dose independent rect. 4 1
272 69.45 temperature 10.0 30 > th dose independent rect. 5 23
273 69.45 radiation 1.0 30 < th dose dependent rect. 4 1
278 69.45 precipitation 0.1 30 < th dose dependent rect. 4 1
282 69.51 wind 9.0 30 < th dose independent rect. 3 23
284 69.53 humidity 50.0 30 > th dose dependent rect. 4 1
285 69.55 wind 9.0 30 < th dose dependent rect. 4 1
289 69.58 temperature 30.0 30 < th dose dependent rect. 4 1
292 69.61 humidity 60.0 1440 > th dose independent rect. 6 3
312 69.75 atmosphere 1015.0 30 < th dose dependent rect. 4 1
352 69.95 humidity 70.0 1440 < th dose dependent rect. 8 1
354 69.98 wind 1.0 10 < th dose dependent rect. 7 5
357 69.99 humidity 60.0 4320 < th dose independent rect. 8 1
370 69.99 atmosphere 995.0 30 > th dose independent rect. 5 23
371 69.99 radiation 10.0 43200 < th dose dependent rect. 3 1
379 70.02 wind 9.0 1440 < th dose independent rect. 3 1
380 70.02 temperature 10.0 1440 > th dose independent rect. 3 1
383 70.02 temperature 30.0 1440 < th dose independent rect. 3 1
387 70.02 humidity 50.0 1440 > th dose independent rect. 3 1
396 70.02 atmosphere 995.0 1440 > th dose independent rect. 3 1
397 70.02 radiation 1.0 1440 < th dose independent rect. 3 1
417 70.02 temperature 10.0 1440 > th dose independent rect. 4 23
422 70.02 radiation 1.0 1440 < th dose dependent rect. 3 1
447 70.03 humidity 60.0 270 < th dose independent rect. 8 1
486 70.03 humidity 60.0 270 < th dose dependent rect. 8 1
513 70.04 humidity 60.0 30 < th dose independent rect. 9 1
558 70.04 humidity 60.0 10 < th dose dependent rect. 9 1
617 70.05 wind 1.0 10 < th dose dependent rect. 9 1
622 70.05 atmosphere 1005.0 270 > th dose dependent rect. 1 1
679 70.05 humidity 60.0 90 < th dose dependent rect. 18 15
700 70.07 wind 1.0 10 < th dose independent rect. 8 4
704 70.08 wind 1.0 10 < th dose independent rect. 8 2
734 70.11 wind 9.0 30 < th dose independent rect. 5 23
751 70.18 radiation 40.0 30 > th dose dependent rect. 9 1
773 70.19 temperature 25.0 1440 > th dose independent rect. 1 1
774 70.19 temperature 25.0 1440 < th dose independent rect. 1 1
775 70.19 humidity 60.0 1440 > th dose independent rect. 4 5
897 70.31 wind 1.0 90 < th dose dependent rect. 6 1
900 70.33 radiation 20.0 30 > th dose independent rect. 7 2
998 70.42 humidity 60.0 1440 > th dose independent rect. 20 13
999 70.42 atmosphere 995.0 30 > th dose independent rect. 3 23