BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0576300 Os04g0576300|J065199E10
         (198 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57150.1  | chr3:21154255-21155952 REVERSE LENGTH=566          263   3e-71
AT5G14460.1  | chr5:4660239-4662543 REVERSE LENGTH=541             84   7e-17

>AT3G57150.1 | chr3:21154255-21155952 REVERSE LENGTH=566
          Length = 565

 Score =  263 bits (673), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/166 (78%), Positives = 143/166 (86%), Gaps = 5/166 (3%)

Query: 38  VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAA-- 95
           VVAWIKR+LRV KTGHSGTLDPKVTGNLIVC+DRATRLVKSQQGAGKEYVCVAR H+A  
Sbjct: 96  VVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVP 155

Query: 96  ---DTARALEALTGAMFQRLPLISAVKRQLRVRTIYESKLLEHDAERHLAVFWISCEAGT 152
                ARALE+LTGA+FQR PLISAVKRQLR+RTIYESKLLE+DA+RHL VFW+SCEAGT
Sbjct: 156 DVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGT 215

Query: 153 YVRTLCVHXXXXXXXXAHMQELHRVRSGIHGEQDNMVTMHDVMDAR 198
           Y+RT+CVH         HMQEL RVRSGI GE +NMVTMHDVMDA+
Sbjct: 216 YIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQ 261



>AT5G14460.1 | chr5:4660239-4662543 REVERSE LENGTH=541
          Length = 540

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 83/188 (44%), Gaps = 39/188 (20%)

Query: 38  VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAA-- 95
           V   ++RL++V K GH+GTLDP  TG LIVCV +AT++V   QG  K Y  V R   A  
Sbjct: 337 VCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMIKGYSGVFRLGEATS 396

Query: 96  --------------------DTARALEALTGAMFQRLPLISAVK--------RQLRVRTI 127
                               D  +AL +  G ++Q  P+ SA+K        +  R  T+
Sbjct: 397 TLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVGGEKMYEKARRGETV 456

Query: 128 YES----KLLEHDAERHLA-----VFWISCEAGTYVRTLCVHXXXXXXXXAHMQELHRVR 178
             S     + + D ER L      +F + C  GTY+R+LC          AH+  L R  
Sbjct: 457 ELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKALGSCAHLTALRRDS 516

Query: 179 SGIHGEQD 186
            G +   D
Sbjct: 517 IGEYSAND 524



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,885,897
Number of extensions: 131356
Number of successful extensions: 346
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)