FiT-DB / Search/ Help/ Sample detail

Os04g0574700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C4-dicarboxylate transporter/malic acid transport protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0187) R2 : 0.769
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.84 (0.0483) R2dC : 0.746 R2C : 0.725
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.318 (0.0392) R2dN8 : 0.043 R2N8 : 0.023
σ : 0.351
deviance : 56.44
__
_____
C
peak time of C : 7.33
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.02 0.329 10.8 0.267 1.96 1.04 -0.128 0.367 -0.257 9.81 0.002696 299 -- --
49.43 0.327 10.8 0.275 1.97 1.06 -0.37 -- -0.248 9.82 0.01255 299 -- --
48.96 0.326 10.8 0.288 1.93 1.03 -- 0.415 -0.258 9.78 0.01494 307 -- --
49.84 0.329 10.8 0.28 1.96 1.1 -- -- -0.241 9.95 0.0004203 314 -- --
79.12 0.414 10.9 0.866 -- 2.19 -- 0.914 -0.222 -- 0.17 888 -- --
55.82 0.35 10.8 0.154 1.84 -- -0.0585 -- -0.301 7.34 -- -- -- --
55.82 0.35 10.8 0.153 1.84 -- -- -- -0.301 7.34 -- -- -- --
69.66 0.389 10.9 0.436 -- 2.54 -- -- -0.179 -- 8.818e-07 878 -- --
51.85 0.335 10.8 -- 1.95 1.1 -- -- -0.26 9.91 0.01988 317 -- --
236.13 0.718 10.9 0.184 -- -- -- -- -0.27 -- -- -- -- --
56.44 0.351 10.8 -- 1.84 -- -- -- -0.318 7.33 -- -- -- --
74.34 0.402 10.8 -- -- 2.45 -- -- -0.236 -- 0.4034 880 -- --
237.02 0.719 10.9 -- -- -- -- -- -0.29 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.57 humidity 50.0 270 > th dose independent rect. 15 19
3 41.24 wind 9.0 270 < th dose independent rect. 10 6
4 41.25 wind 7.0 270 < th dose independent rect. 20 9
5 41.34 precipitation 0.1 270 < th dose independent rect. 10 6
6 41.34 temperature 15.0 270 > th dose independent rect. 20 9
7 41.34 precipitation 0.1 270 < th dose dependent rect. 10 6
8 41.35 radiation 1.0 30 < th dose dependent sin 17 NA
9 41.36 atmosphere 995.0 270 > th dose independent rect. 16 18
11 41.39 temperature 10.0 270 > th dose independent rect. 10 6
12 41.39 atmosphere 1015.0 270 < th dose independent rect. 10 6
13 41.39 temperature 10.0 270 > th dose independent rect. 16 18
14 41.39 temperature 10.0 270 > th dose dependent rect. 10 5
16 41.47 radiation 1.0 30 < th dose independent sin 17 NA
17 41.47 radiation 1.0 270 > th dose independent rect. 10 5
18 41.47 wind 9.0 270 < th dose independent rect. 16 18
29 41.62 precipitation 0.1 270 < th dose independent rect. 16 18
30 41.62 precipitation 0.1 270 < th dose dependent rect. 16 18
31 41.64 radiation 1.0 270 < th dose independent rect. 20 9
33 41.64 radiation 10.0 270 < th dose dependent rect. 20 9
35 41.65 temperature 30.0 270 < th dose independent rect. 20 9
36 41.65 humidity 50.0 270 > th dose independent rect. 20 9
39 41.65 atmosphere 995.0 270 > th dose independent rect. 20 9
43 41.65 temperature 10.0 270 > th dose independent rect. 5 15
44 41.65 atmosphere 1015.0 270 < th dose independent rect. 5 15
49 41.68 radiation 1.0 30 > th dose independent sin 18 NA
56 41.88 precipitation 0.1 270 < th dose independent rect. 5 15
57 41.88 precipitation 0.1 270 < th dose dependent rect. 5 15
59 41.94 atmosphere 995.0 270 > th dose independent rect. 10 5
60 41.94 precipitation 0.1 270 < th dose independent rect. 20 9
61 41.94 precipitation 0.1 270 < th dose dependent rect. 20 9
65 42.06 wind 1.0 270 > th dose independent rect. 10 6
67 42.12 wind 9.0 270 < th dose independent rect. 5 15
86 42.33 temperature 10.0 30 > th dose dependent rect. 10 8
87 42.35 atmosphere 995.0 270 > th dose independent rect. 5 15
92 42.45 precipitation 0.1 270 < th dose independent rect. 23 16
93 42.45 precipitation 0.1 270 < th dose dependent rect. 23 16
96 42.48 humidity 50.0 270 > th dose independent rect. 10 5
104 42.64 temperature 10.0 270 > th dose dependent rect. 24 15
106 42.66 wind 1.0 270 > th dose independent rect. 15 8
107 42.68 precipitation 0.1 270 < th dose independent rect. 1 14
109 42.68 precipitation 0.1 270 < th dose dependent rect. 1 14
114 42.73 precipitation 0.1 270 < th dose independent rect. 15 8
115 42.73 precipitation 0.1 270 < th dose dependent rect. 15 8
119 42.76 temperature 10.0 90 > th dose dependent rect. 2 15
136 42.89 atmosphere 1015.0 270 < th dose independent rect. 16 18
138 42.91 radiation 1.0 270 > th dose independent rect. 16 18
140 42.92 wind 9.0 270 < th dose independent rect. 23 16
141 42.93 humidity 90.0 10 < th dose independent rect. 12 6
164 43.02 temperature 10.0 270 > th dose independent rect. 15 8
166 43.02 temperature 10.0 270 > th dose independent rect. 23 16
175 43.10 radiation 40.0 270 < th dose independent rect. 15 8
181 43.13 wind 9.0 270 < th dose dependent rect. 10 6
186 43.18 humidity 90.0 270 < th dose independent rect. 10 5
189 43.19 radiation 40.0 270 < th dose independent rect. 16 18
210 43.26 wind 9.0 270 < th dose dependent rect. 11 4
213 43.29 wind 9.0 270 < th dose independent rect. 15 8
214 43.29 temperature 10.0 10 > th dose dependent rect. 12 6
219 43.34 atmosphere 995.0 270 > th dose independent rect. 15 8
226 43.39 atmosphere 995.0 270 > th dose independent rect. 23 16
232 43.41 precipitation 0.1 90 < th dose independent rect. 18 17
233 43.41 precipitation 0.1 90 < th dose dependent rect. 18 17
241 43.46 precipitation 0.1 270 < th dose independent rect. 15 10
242 43.46 precipitation 0.1 270 < th dose dependent rect. 15 10
243 43.47 wind 9.0 270 < th dose independent rect. 1 14
251 43.49 temperature 10.0 270 > th dose independent rect. 15 10
252 43.49 temperature 10.0 270 > th dose independent rect. 1 14
253 43.49 atmosphere 1015.0 270 < th dose independent rect. 1 14
272 43.52 wind 9.0 30 < th dose independent rect. 18 16
281 43.54 temperature 10.0 90 > th dose independent rect. 18 17
301 43.56 temperature 15.0 270 > th dose independent rect. 10 19
307 43.60 radiation 40.0 270 < th dose independent rect. 15 10
310 43.61 wind 9.0 270 < th dose dependent rect. 20 9
330 43.66 atmosphere 1015.0 270 < th dose independent rect. 15 8
333 43.66 humidity 50.0 270 > th dose dependent rect. 20 9
335 43.68 wind 9.0 10 < th dose independent rect. 12 6
339 43.69 temperature 10.0 30 > th dose dependent rect. 18 9
341 43.70 temperature 10.0 1440 > th dose independent rect. 11 8
345 43.70 temperature 10.0 1440 > th dose independent rect. 19 16
348 43.70 atmosphere 995.0 1440 > th dose independent rect. 19 16
351 43.71 wind 9.0 270 < th dose independent rect. 10 19
355 43.73 precipitation 0.1 10 < th dose independent rect. 12 6
358 43.73 precipitation 0.1 10 < th dose dependent rect. 12 6
363 43.75 atmosphere 1015.0 270 < th dose independent rect. 23 16
379 43.80 humidity 50.0 10 > th dose independent rect. 18 18
384 43.82 humidity 50.0 270 > th dose independent rect. 5 5
386 43.83 wind 9.0 270 < th dose independent rect. 5 5
391 43.84 temperature 10.0 270 > th dose independent rect. 5 5
392 43.84 atmosphere 995.0 270 > th dose independent rect. 5 5
393 43.84 atmosphere 1015.0 270 < th dose independent rect. 5 5
405 43.89 precipitation 0.1 270 < th dose independent rect. 5 5
407 43.89 atmosphere 995.0 10 > th dose independent rect. 18 18
410 43.89 precipitation 0.1 270 < th dose dependent rect. 5 5
414 43.91 temperature 10.0 10 > th dose independent rect. 12 6
416 43.91 atmosphere 1015.0 10 < th dose independent rect. 12 6
418 43.91 wind 9.0 10 < th dose independent rect. 18 18
419 43.91 temperature 10.0 10 > th dose independent rect. 18 18
420 43.92 wind 1.0 30 > th dose independent rect. 10 8
434 43.95 wind 9.0 270 < th dose independent rect. 15 10
444 43.97 atmosphere 995.0 270 > th dose independent rect. 1 14
455 44.02 radiation 1.0 270 < th dose dependent sin 11 NA
456 44.02 temperature 10.0 270 > th dose dependent rect. 15 9
457 44.03 wind 1.0 10 > th dose independent rect. 12 6
459 44.03 temperature 20.0 30 > th dose dependent rect. 18 9
474 44.07 humidity 50.0 270 > th dose independent rect. 5 15
484 44.11 humidity 50.0 270 > th dose independent rect. 15 8
494 44.15 precipitation 0.1 270 < th dose independent rect. 10 19
496 44.15 precipitation 0.1 270 < th dose dependent rect. 10 19
497 44.16 precipitation 0.1 90 < th dose independent rect. 3 14
498 44.16 temperature 30.0 270 < th dose independent rect. 15 19
500 44.16 precipitation 0.1 90 < th dose dependent rect. 3 14
523 44.23 radiation 1.0 270 < th dose independent sin 11 NA
539 44.26 precipitation 0.1 10 < th dose independent rect. 18 18
541 44.26 precipitation 0.1 10 < th dose dependent rect. 18 18
544 44.27 humidity 50.0 90 > th dose independent rect. 17 10
554 44.29 radiation 10.0 90 < th dose independent rect. 17 10
556 44.30 atmosphere 1015.0 30 < th dose independent rect. 18 16
567 44.34 atmosphere 1015.0 10 < th dose independent rect. 18 18
595 44.40 radiation 20.0 90 < th dose dependent rect. 17 10
627 44.44 humidity 90.0 270 < th dose dependent rect. 10 5
635 44.45 temperature 20.0 30 > th dose dependent rect. 18 6
651 44.51 temperature 30.0 270 < th dose independent rect. 5 5
670 44.53 humidity 50.0 270 > th dose independent rect. 23 16
682 44.56 humidity 50.0 270 > th dose dependent rect. 5 5
685 44.57 wind 1.0 270 > th dose independent rect. 5 15
700 44.62 temperature 25.0 30 > th dose independent rect. 18 5
706 44.64 wind 1.0 270 > th dose independent rect. 15 19
724 44.68 atmosphere 995.0 90 > th dose independent rect. 17 10
759 44.75 radiation 1.0 270 > th dose independent sin 11 NA
785 44.83 atmosphere 995.0 30 > th dose independent rect. 10 8
796 44.85 radiation 1.0 10 < th dose dependent rect. 17 10
801 44.87 radiation 40.0 270 < th dose independent rect. 5 5
803 44.87 temperature 10.0 90 > th dose independent rect. 17 10
807 44.87 temperature 10.0 90 > th dose independent rect. 3 14
808 44.87 atmosphere 1015.0 90 < th dose independent rect. 3 14
816 44.89 wind 9.0 270 < th dose dependent rect. 5 5
822 44.90 wind 9.0 90 < th dose independent rect. 3 14
823 44.90 wind 9.0 270 < th dose dependent rect. 10 19
824 44.92 atmosphere 995.0 10 > th dose independent rect. 12 6
855 44.99 precipitation 0.1 270 < th dose independent rect. 13 1
859 44.99 wind 9.0 90 < th dose independent rect. 17 10
861 44.99 precipitation 0.1 270 < th dose dependent rect. 13 1
870 45.00 precipitation 0.1 90 < th dose independent rect. 17 10
879 45.00 precipitation 0.1 90 < th dose dependent rect. 17 10
965 45.16 wind 1.0 90 > th dose independent rect. 17 10