BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0574700 Os04g0574700|AK060520
(578 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G12480.1 | chr1:4257427-4259249 REVERSE LENGTH=557 582 e-166
AT4G27970.1 | chr4:13918290-13920122 REVERSE LENGTH=520 373 e-103
AT5G24030.1 | chr5:8118618-8120993 REVERSE LENGTH=636 367 e-102
AT1G62280.1 | chr1:23007309-23008540 REVERSE LENGTH=386 197 1e-50
AT1G62262.1 | chr1:23000318-23001491 REVERSE LENGTH=366 179 5e-45
>AT1G12480.1 | chr1:4257427-4259249 REVERSE LENGTH=557
Length = 556
Score = 582 bits (1501), Expect = e-166, Method: Compositional matrix adjust.
Identities = 310/546 (56%), Positives = 360/546 (65%), Gaps = 30/546 (5%)
Query: 31 RQSAMSGPINIRGERRPPPMQRAFSRQVSLGSGVTVLGMDKVGKNGGRGQQRALPRSGKS 90
R S GP RG++RP R FSRQVSL +G +VL + + R +++LPRSG+S
Sbjct: 36 RFSGNRGPN--RGKQRP---FRGFSRQVSLETGFSVLNRE----SRERDDKKSLPRSGRS 86
Query: 91 LGVLNHTXXXXXXXXXXXXXXXXXFSMFRTKSTLSKQNSLLPSRIREPDLELPPHVEGPS 150
G FSMFRTKSTLSKQ SLLPS IRE D+E E
Sbjct: 87 FGGFE-----SGGIINGGDGRKTDFSMFRTKSTLSKQKSLLPSIIRERDIENSLRTEDG- 140
Query: 151 VGRQGGEDPLNKSVPAGRYFAALRGPELDEVRDYEDILLPKDEVWPFLLRFPVGCFGVCL 210
+ +D +N++V AGRYFAALRGPELDEV+D EDILLPK+E WPFLLRFP+GCFG+CL
Sbjct: 141 ---ETKDDSINENVSAGRYFAALRGPELDEVKDNEDILLPKEEQWPFLLRFPIGCFGICL 197
Query: 211 GLGSQAILWGALAASPAMRFLHVTPMINXXXXXXXXXXXXXXXXXXXXKCVFYFEAIRRE 270
GL SQA+LW ALA SPA FLH+TP+IN KC+FYFEA++RE
Sbjct: 198 GLSSQAVLWLALAKSPATNFLHITPLINLVVWLFSLVVLVSVSFTYILKCIFYFEAVKRE 257
Query: 271 YFHPVRVNFFFAPSIAAMFLTIGLPRAVAPER--LHPAVWCAFVAPLFGLELKIYGQWLS 328
YFHPVRVNFFFAP + MFL I +P +P R LHPA+WC F+ P F LELKIYGQWLS
Sbjct: 258 YFHPVRVNFFFAPWVVCMFLAISVPPMFSPNRKYLHPAIWCVFMGPYFFLELKIYGQWLS 317
Query: 329 GGKRRLCKVANPSSHLSVVGNFVGAILAARVGWAEAGKFLWAIGVAHYIVVFVTLYQRLP 388
GGKRRLCKVANPSSHLSVVGNFVGAILA++VGW E KFLWA+G AHY+VVFVTLYQRLP
Sbjct: 318 GGKRRLCKVANPSSHLSVVGNFVGAILASKVGWDEVAKFLWAVGFAHYLVVFVTLYQRLP 377
Query: 389 TNEALPKELHPVYSMFIXXXXXXXXXXXXXXXXFDAVARTFFFMALFLYMSLVVRINFFR 448
T+EALPKELHPVYSMFI FD +RT FF+ALFLY+SLV RINFF
Sbjct: 378 TSEALPKELHPVYSMFIAAPSAASIAWNTIYGQFDGCSRTCFFIALFLYISLVARINFFT 437
Query: 449 GFRFSIAWWSYTFPMTTASLATVKYAEAEPCFTSRXXXXXXXXXXXXXXXXXXXXXXXHA 508
GF+FS+AWWSYTFPMTTAS+AT+KYAEA P + SR HA
Sbjct: 438 GFKFSVAWWSYTFPMTTASVATIKYAEAVPGYPSRALALTLSFISTAMVCVLFVSTLLHA 497
Query: 509 FVWRSLFPNDLAIAITKDRQNGAFKPHGKGRKAGKRVYDIKRWAKQAPLSLVSSITKSNS 568
FVW++LFPNDLAIAITK + KP KR YD+KRW KQA L I+
Sbjct: 498 FVWQTLFPNDLAIAITKRKLTREKKPF-------KRAYDLKRWTKQA---LAKKISAEKD 547
Query: 569 ADKEEE 574
+ EEE
Sbjct: 548 FEAEEE 553
>AT4G27970.1 | chr4:13918290-13920122 REVERSE LENGTH=520
Length = 519
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/414 (45%), Positives = 258/414 (62%), Gaps = 16/414 (3%)
Query: 115 FSMFRTKS-TLSKQNSLLPSRIREPDLELPPHVEGPSVGRQGGEDPLNKSVPAGRYFAAL 173
+ +FRT S L +Q S L + E L+ H E + +S+ A RYF AL
Sbjct: 70 YDLFRTMSGKLERQISNLRGKPTESSLQ--DHKE------------ITESLTADRYFDAL 115
Query: 174 RGPELDEVRDYEDILLPKDEVWPFLLRFPVGCFGVCLGLGSQAILWGALAASPAMRFLHV 233
+GPEL+ +++ E I+LP+D+ WPFLLRFP+ +G+CLG+ SQAI+W LA + A +FLHV
Sbjct: 116 QGPELETLKEKEKIVLPEDKTWPFLLRFPITSYGMCLGVSSQAIMWKTLATTEAEKFLHV 175
Query: 234 TPMINXXXXXXXXXXXXXXXXXXXXKCVFYFEAIRREYFHPVRVNFFFAPSIAAMFLTIG 293
T +IN K + +FEA+RRE+ HP+RVNFFFAP I+ +FL +G
Sbjct: 176 TQVINHVLWWISLLLLLAVSITYLFKTILFFEAVRREFRHPIRVNFFFAPLISILFLALG 235
Query: 294 LPRAVAPERLHPAVWCAFVAPLFGLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGA 353
+P ++ L +W +AP+ LE+KIYGQW+SGG+RRL KVANP++HLS+VGNF GA
Sbjct: 236 IPHSII-SHLPSTLWYFLMAPILFLEMKIYGQWMSGGQRRLSKVANPTNHLSIVGNFAGA 294
Query: 354 ILAARVGWAEAGKFLWAIGVAHYIVVFVTLYQRLPTNEALPKELHPVYSMFIXXXXXXXX 413
+L A +G E F +AIG+A+Y+V+FVTLYQRLPTNE LPKELHPV+ +F+
Sbjct: 295 LLGASMGLKEGPIFFFAIGLAYYLVLFVTLYQRLPTNETLPKELHPVFFLFVAAPAVASM 354
Query: 414 XXXXXXXXFDAVARTFFFMALFLYMSLVVRINFFRGFRFSIAWWSYTFPMTTASLATVKY 473
FD +R +F++LFLY SLV RIN FRGF+FS+AWW+YTFPMT + AT+KY
Sbjct: 355 AWTKISASFDLGSRLAYFISLFLYFSLVCRINLFRGFKFSLAWWAYTFPMTAVASATIKY 414
Query: 474 AEAEPCFTSRXXXXXXXXXXXXXXXXXXXXXXXHAFVWRSLFPNDLAIAITKDR 527
++ ++ HAFV R LFPND+ IAI+ ++
Sbjct: 415 SDEVTGVATKILSVVMSGAATLTVIAVLGLTVMHAFVQRDLFPNDVVIAISAEQ 468
>AT5G24030.1 | chr5:8118618-8120993 REVERSE LENGTH=636
Length = 635
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/375 (46%), Positives = 241/375 (64%), Gaps = 4/375 (1%)
Query: 162 KSVPAGRYFAALRGPELDEVRDYEDILLPKDEVWPFLLRFPVGCFGVCLGLGSQAILWGA 221
+++P RY+ AL GPEL+ +R E+I+LP D+ WPFLLR+P+ FG+CLG+ SQAI+W
Sbjct: 219 EAMPVDRYYDALEGPELETLRPQEEIVLPNDKKWPFLLRYPISTFGMCLGVSSQAIMWKT 278
Query: 222 LAASPAMRFLHVTPMINXXXXXXXXXXXXXXXXXXXXKCVFYFEAIRREYFHPVRVNFFF 281
LA + +FLHV IN K + +FEA+RREY+HP+R+NFFF
Sbjct: 279 LATAEPTKFLHVPLWINQGLWFISVALILTIATIYLLKIILFFEAVRREYYHPIRINFFF 338
Query: 282 APSIAAMFLTIGLPRAVAPERLHPAVWCAFVAPLFGLELKIYGQWLSGGKRRLCKVANPS 341
AP I+ +FL +G+P ++ + H +W + P LELKIYGQW+SGG+RRL +VANP+
Sbjct: 339 APFISLLFLALGVPPSIITDLPH-FLWYLLMFPFICLELKIYGQWMSGGQRRLSRVANPT 397
Query: 342 SHLSVVGNFVGAILAARVGWAEAGKFLWAIGVAHYIVVFVTLYQRLPTNEALPKELHPVY 401
+HLSVVGNFVGA+L A +G E F +A+G+AHY+V+FVTLYQRLPTNE LPK+LHPV+
Sbjct: 398 NHLSVVGNFVGALLGASMGLREGPIFFYAVGMAHYLVLFVTLYQRLPTNETLPKDLHPVF 457
Query: 402 SMFIXXXXXXXXXXXXXXXXFDAVARTFFFMALFLYMSLVVRINFFRGFRFSIAWWSYTF 461
+F+ FD ++ +F+A+FLY SL VRINFFRG +FS++WW+YTF
Sbjct: 458 FLFVAAPSVASMAWAKVTGSFDYGSKVCYFIAIFLYFSLAVRINFFRGIKFSLSWWAYTF 517
Query: 462 PMTTASLATVKYAEAEPCFTSRXXXXXXXXXXXXXXXXXXXXXXXHAFVWRSLFPNDLAI 521
PMT A++AT++YA ++ HAFV R LFPNDLAI
Sbjct: 518 PMTGAAIATIRYATVVKSTMTQIMCVVLCAIATLVVFALLVTTIIHAFVLRDLFPNDLAI 577
Query: 522 AIT---KDRQNGAFK 533
AI+ + +QN +
Sbjct: 578 AISNRPRPKQNSQHR 592
>AT1G62280.1 | chr1:23007309-23008540 REVERSE LENGTH=386
Length = 385
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 158/278 (56%), Gaps = 6/278 (2%)
Query: 204 GCFGVCLGLGSQAILWGALAA--SPAMRFLH--VTPMINXXXXXXXXXXXXXXXXXXXXK 259
G F + L L SQA+LW + A SP+M +H + M K
Sbjct: 44 GYFRISLSLCSQALLWKIMIAPESPSMSHMHSKLPSMAFHLLWYLALVTQVSLCFLYALK 103
Query: 260 CVFYFEAIRREYFHPVRVNFFFAPSIAAMFLTIGLPRAVAPERLHPAVWCAFVAPLFGLE 319
C+F+F+ ++ E+ H + VN+ +APSI+ + + P L+ ++ F P+ L+
Sbjct: 104 CIFFFDKVKEEFLHYIGVNYLYAPSISWLLMLQSAPMMEPNSVLYQTLFWIFAVPVLTLD 163
Query: 320 LKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILAARVGWAEAGKFLWAIGVAHYIVV 379
+K+YGQW + KR L +ANP+S +SV+ N V A AA +GW E ++++G+ HY+V+
Sbjct: 164 IKLYGQWFTTEKRFLSMLANPASQVSVIANLVAARGAAEMGWNECALCMFSLGMVHYLVI 223
Query: 380 FVTLYQRLPTNEALPKELHPVYSMFIXXXXXXXXXXXXXXXXFDAVARTFFFMALFLYMS 439
FVTLYQRLP P +L P++ +F+ FDAVA+ FF++LF++MS
Sbjct: 224 FVTLYQRLPGGNNFPAKLRPIFFLFVAAPAMASLAWNSICGTFDAVAKMLFFLSLFIFMS 283
Query: 440 LVVRINFFRGF--RFSIAWWSYTFPMTTASLATVKYAE 475
LV R N F+ RF++AWW+Y+FP+T +L +V+YA+
Sbjct: 284 LVCRPNLFKKSMKRFNVAWWAYSFPLTFLALDSVQYAQ 321
>AT1G62262.1 | chr1:23000318-23001491 REVERSE LENGTH=366
Length = 365
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 147/276 (53%), Gaps = 10/276 (3%)
Query: 204 GCFGVCLGLGSQAILWGALAASPAMRFLH--VTPMINXXXXXXXXXXXXXXXXXXXXKCV 261
G F + L L SQA+LW M LH + M KC+
Sbjct: 44 GYFRISLSLCSQALLWKI------MVHLHSELPSMAYYLLWYLALATQVSLCFLYAFKCI 97
Query: 262 FYFEAIRREYFHPVRVNFFFAPSIAAMFLTIGLPRAVAPERLHPAVWCAFVAPLFGLELK 321
F F+ ++ E+ H + VN+ +APSI+ + L P L+ ++ F P+ L+ K
Sbjct: 98 FLFDMVKEEFSHYIGVNYLYAPSISCLLLLQSAPMIEPHSVLYQTLFWIFAVPVLTLDTK 157
Query: 322 IYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILAARVGWAEAGKFLWAIGVAHYIVVFV 381
+YGQW + KR L +ANP+S +SV+ N V A AA +GW E L+++G+ HY+V+FV
Sbjct: 158 LYGQWFTTEKRFLSIMANPASQVSVIANLVAARGAAEMGWKECALCLFSLGMVHYLVIFV 217
Query: 382 TLYQRLPTNEALPKELHPVYSMFIXXXXXXXXXXXXXXXXFDAVARTFFFMALFLYMSLV 441
TLYQRLP P L PV+ +F FD +A+ FF++LF+++SLV
Sbjct: 218 TLYQRLPGGNNFPTTLRPVFFLFFAAPATASLAWNSICGNFDTIAKMLFFLSLFIFISLV 277
Query: 442 VRINFFRGF--RFSIAWWSYTFPMTTASLATVKYAE 475
R N + RF++AWW+Y+FP+T +L +V+YA+
Sbjct: 278 CRPNLLKKSIKRFNVAWWAYSFPITFLALNSVQYAQ 313
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,026,875
Number of extensions: 429964
Number of successful extensions: 1124
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1098
Number of HSP's successfully gapped: 5
Length of query: 578
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 474
Effective length of database: 8,255,305
Effective search space: 3913014570
Effective search space used: 3913014570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 114 (48.5 bits)