Os04g0566800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Spc97/Spc98 family protein.
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Os04g0566800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Spc97/Spc98 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.59 | 0.276 | 9.01 | -0.326 | 0.605 | 0.896 | 0.25 | 0.751 | -0.0968 | 10.9 | 18.91 | 2288 | -- | -- |
| 35 | 0.276 | 9.04 | -0.517 | 0.607 | 0.918 | 0.158 | -- | -0.16 | 10.9 | 19.71 | 2247 | -- | -- |
| 34.83 | 0.275 | 9.01 | -0.336 | 0.605 | 0.884 | -- | 0.639 | -0.0997 | 10.9 | 19.44 | 2249 | -- | -- |
| 35.14 | 0.276 | 9.04 | -0.495 | 0.606 | 0.883 | -- | -- | -0.144 | 10.8 | 19.99 | 2245 | -- | -- |
| 45.9 | 0.317 | 9.03 | -0.328 | -- | 1.14 | -- | 0.526 | -0.101 | -- | 16.93 | 4531 | -- | -- |
| 56.15 | 0.351 | 8.99 | -0.178 | 0.48 | -- | 0.118 | -- | 0.0509 | 10.9 | -- | -- | -- | -- |
| 56.21 | 0.351 | 8.99 | -0.173 | 0.48 | -- | -- | -- | 0.0513 | 10.9 | -- | -- | -- | -- |
| 46.18 | 0.318 | 9.04 | -0.41 | -- | 1.15 | -- | -- | -0.124 | -- | 16.93 | 4531 | -- | -- |
| 40.67 | 0.297 | 9.01 | -- | 0.589 | 0.71 | -- | -- | -0.0539 | 10.8 | 21.7 | 2165 | -- | -- |
| 70.5 | 0.392 | 9.01 | -0.183 | -- | -- | -- | -- | 0.048 | -- | -- | -- | -- | -- |
| 57 | 0.353 | 8.99 | -- | 0.481 | -- | -- | -- | 0.0705 | 10.9 | -- | -- | -- | -- |
| 50.38 | 0.332 | 9.03 | -- | -- | 1.04 | -- | -- | -0.0643 | -- | 16.93 | 4531 | -- | -- |
| 71.38 | 0.394 | 9 | -- | -- | -- | -- | -- | 0.0683 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.63 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 33.64 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 7 | 33.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 28 | 34.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 7 |
| 75 | 34.25 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 169 | 34.51 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 248 | 34.62 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 351 | 34.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 21 |
| 453 | 34.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 21 |
| 464 | 34.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 537 | 34.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 540 | 34.92 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 556 | 34.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 570 | 34.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 571 | 34.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 581 | 34.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 695 | 35.02 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 807 | 35.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 21 |
| 896 | 35.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 18 |