BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0566800 Os04g0566800|AK060279
(258 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G43610.1 | chr3:15517772-15523927 REVERSE LENGTH=1208 213 7e-56
AT3G53760.1 | chr3:19918182-19922264 REVERSE LENGTH=746 62 3e-10
AT1G80260.1 | chr1:30175924-30180511 FORWARD LENGTH=996 59 3e-09
AT5G06680.1 | chr5:2056741-2059369 FORWARD LENGTH=839 48 5e-06
>AT3G43610.1 | chr3:15517772-15523927 REVERSE LENGTH=1208
Length = 1207
Score = 213 bits (543), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 113/252 (44%), Positives = 172/252 (68%), Gaps = 16/252 (6%)
Query: 4 QPVVSLKASTCGLDVLDDILLGYKVDWPVNIVITEEALKTYAEIFRYLVQVRLAVFSLTE 63
Q + + ST G+ D + LGY+VDWP++I++T +AL YA++F +LVQV+LA + LT+
Sbjct: 950 QGTMHIPPSTIGVRSFDFLRLGYRVDWPISIILTCDALTAYADVFSFLVQVKLAAYVLTD 1009
Query: 64 VWRFLKELTQLISRSSHNRPDVLKE----LSSVMKLRHQVYHFLSTLQQYLHCHLSDISW 119
VW LK++ ++ + +LK+ L+ +MKLRHQV HF++ LQQY+H LS +SW
Sbjct: 1010 VWCSLKDVRHMMH---EKKEKILKQELRWLNILMKLRHQVNHFVTALQQYVHSELSHVSW 1066
Query: 120 RRFQHSLQHQVRDMLDLEYVHLCYVTDALHICFLSAETKPIAAIINSILQQALELRSCF- 178
+F HSL+++V+DM+DLE VH+ Y+++AL ICFLS ET+ I+ II +ILQ AL+ RSC
Sbjct: 1067 SKFLHSLKNKVKDMMDLESVHMAYLSEALRICFLSDETQIISNIIENILQCALDFRSCLP 1126
Query: 179 ---KSLNYI-SESTVKQLNLDSLINFSQVDAIRTKFEGNIKDLYILHLKSSKYGEIGLYR 234
+S + + ++S K L IN SQV ++ F+ +K+L+ HL+S K+G+ GL R
Sbjct: 1127 RGIQSTDRVPNDSWTKTLG----INTSQVMMVKQNFDKELKELHKCHLRSPKHGKYGLSR 1182
Query: 235 FWGYLNYNEYHS 246
FW YLN+N Y+S
Sbjct: 1183 FWDYLNFNLYYS 1194
>AT3G53760.1 | chr3:19918182-19922264 REVERSE LENGTH=746
Length = 745
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 111/248 (44%), Gaps = 32/248 (12%)
Query: 11 ASTCGLDVLDDILLGYKVDWPVNIVITEEALKTYAEIFRYLVQVRLAVFSLTEVWRFLKE 70
S +D D I L Y VDWP+ + T+E L Y ++F+YL++++ L + W +
Sbjct: 498 TSDTSVDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQMELEKSWASVMH 557
Query: 71 LTQLISRSSHNRPDVLKELSS---------VMKLRHQVYHFLSTLQQYLHCHLSDISWRR 121
+ S+ +R D L +S + ++R + + LQ Y+ + + W+
Sbjct: 558 QDHI--ESAQHRKDGLNGSTSQQRRQGIRPMWRVREHMAFLIRNLQFYIQVDVIESQWKV 615
Query: 122 FQHSLQHQVRDMLDLEYVHLCYVTDALHICFLSAETKPIAAIINSILQQALELRSCFKSL 181
Q + H +D +L H Y++ + FL + ++ I++SI++ L+ C+
Sbjct: 616 LQTHI-HDSQDFTELVGFHQEYLSALISQSFL--DIGSVSRILDSIMKLCLQF--CWNIE 670
Query: 182 NYISESTVKQLNLDSLINFSQVDAIRTKFEGNIKDLYILHLKSSKYGEIG----LYRFWG 237
N +S N S+++ I +F LY + L+SSK L RF
Sbjct: 671 NQ-----------ESNPNTSELENIAEEFNKKSNSLYTI-LRSSKLAGSQRAPFLRRFLL 718
Query: 238 YLNYNEYH 245
LN+N ++
Sbjct: 719 RLNFNSFY 726
>AT1G80260.1 | chr1:30175924-30180511 FORWARD LENGTH=996
Length = 995
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 34/226 (15%)
Query: 10 KASTCGLDVLDDILLGYKVDWPVNIVITEEALKTYAEIFRYLVQVRLAVFSLTEVWRFLK 69
+ ++ G+D L+ + YKV WP+ ++ EA+K Y ++ +L++V+ A + L + R++
Sbjct: 746 RVNSFGIDCLESLKFTYKVPWPLELIANSEAIKKYNQVMGFLLKVKRAKYVLDKARRWM- 804
Query: 70 ELTQLISRSSHNRPDVLKELSSVMKLR-------HQVYHFLSTLQQYLHCHLSDISWRRF 122
K S K+R ++ +F+ QY+ + +WR
Sbjct: 805 ----------------WKGKGSATKIRKHHWLLEQKLLNFVDAFHQYVMDRVYHTAWREL 848
Query: 123 QHSLQHQVRDMLDLEYVHLCYVTDALHICFLSAET--KPIAAIINSILQQALELRSCFKS 180
++ + + ++ YVH Y+ CF+ E IA+ IN IL ALE S ++
Sbjct: 849 CEAMV-KAGSLDEVIYVHETYLLSIQRQCFVVQEKLWAIIASRINMILGLALEFYSIQQT 907
Query: 181 LNYISESTVKQLNLDSLINFSQVDAIRTKFEGNIKDLYILHLKSSK 226
L+ S V + + ++D I +FE I ++L + SSK
Sbjct: 908 LS--SGGAVSAIKARCEM---EIDRIEKQFEDCIA--FLLRVLSSK 946
>AT5G06680.1 | chr5:2056741-2059369 FORWARD LENGTH=839
Length = 838
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
Query: 15 GLDVLDDILLGYKVDWPVNIVITEEALKTYAEIFRYLVQVRLAVFSLTEVWRFLKE---- 70
G DV L Y+ P++ V TE L Y +F +L +++ +L +W+ +K
Sbjct: 576 GWDVFS---LEYEARVPLDTVFTESVLSKYLRVFNFLWKLKRVEHALIGIWKTMKPNCIT 632
Query: 71 LTQLISRSSHNRPDVLKELSSVMKLRHQVYHFLSTLQQYLHCHLSDISWRRFQHSLQHQV 130
+ S + +L L L +++ HF++ Q Y+ + ++SW F ++
Sbjct: 633 SNSFVKLQSSVKLQLLSALRRCQVLWNEMNHFVTNFQYYIMFEVLEVSWSNFSKEME-AA 691
Query: 131 RDMLDLEYVHLCYVTDALHICFLSAETKPIAAIINSILQQALELRS 176
+D+ DL H Y+ + L +++ I + + + L RS
Sbjct: 692 KDLDDLLAAHEKYLNAIVGKSLLGEQSQTIRESLFVLFELILRFRS 737
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,101,888
Number of extensions: 191805
Number of successful extensions: 678
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 5
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)