Os04g0566000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0566000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.04 | 0.294 | 8.55 | -0.314 | 0.288 | -0.754 | -0.298 | -1.68 | -0.265 | 2.96 | 7.023 | 4283 | -- | -- |
| 40.62 | 0.297 | 8.52 | -0.324 | 0.251 | -0.482 | -0.196 | -- | -0.251 | 2.9 | 6.8 | 4290 | -- | -- |
| 39.19 | 0.292 | 8.54 | -0.328 | 0.276 | -0.789 | -- | -1.73 | -0.248 | 3.27 | 7.1 | 4128 | -- | -- |
| 40.71 | 0.297 | 8.5 | -0.335 | 0.277 | -0.51 | -- | -- | -0.225 | 3.09 | 6.6 | 4277 | -- | -- |
| 42.88 | 0.305 | 8.54 | -0.332 | -- | -0.808 | -- | -1.69 | -0.24 | -- | 7.1 | 4056 | -- | -- |
| 45.03 | 0.315 | 8.51 | -0.525 | 0.283 | -- | -0.402 | -- | -0.269 | 3.54 | -- | -- | -- | -- |
| 45.53 | 0.316 | 8.51 | -0.518 | 0.28 | -- | -- | -- | -0.267 | 3.5 | -- | -- | -- | -- |
| 44.32 | 0.31 | 8.5 | -0.312 | -- | -0.559 | -- | -- | -0.193 | -- | 7.1 | 4056 | -- | -- |
| 43.23 | 0.306 | 8.49 | -- | 0.271 | -0.652 | -- | -- | -0.178 | 2.99 | 6.7 | 4283 | -- | -- |
| 49.93 | 0.33 | 8.51 | -0.506 | -- | -- | -- | -- | -0.26 | -- | -- | -- | -- | -- |
| 52.6 | 0.339 | 8.5 | -- | 0.27 | -- | -- | -- | -0.209 | 3.5 | -- | -- | -- | -- |
| 46.43 | 0.317 | 8.48 | -- | -- | -0.706 | -- | -- | -0.135 | -- | 6.8 | 4070 | -- | -- |
| 56.69 | 0.351 | 8.5 | -- | -- | -- | -- | -- | -0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.49 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 2 | 34.54 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 4 | 34.54 | wind | 9 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 7 | 34.55 | wind | 9 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 9 | 34.55 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 11 | 34.56 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 18 | 34.59 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 22 | 34.62 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 27 | 34.66 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 28 | 34.67 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 29 | 34.68 | wind | 9 | 43200 | < th | dose independent | sin | 1 | NA |
| 42 | 34.70 | wind | 9 | 43200 | > th | dose independent | sin | 1 | NA |
| 46 | 34.70 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 21 |
| 48 | 34.70 | wind | 9 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 49 | 34.70 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 58 | 34.71 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 59 | 34.72 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 60 | 34.72 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 18 |
| 82 | 34.73 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 83 | 34.73 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 91 | 34.74 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 95 | 34.74 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 101 | 34.75 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 113 | 34.75 | wind | 9 | 43200 | < th | dose independent | rect. | 1 | 20 |
| 115 | 34.75 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 122 | 34.75 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 127 | 34.76 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 144 | 34.76 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 163 | 34.77 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 189 | 34.79 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 14 |
| 210 | 34.81 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 246 | 34.83 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 20 |
| 266 | 34.85 | wind | 7 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 267 | 34.85 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 274 | 34.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 320 | 34.89 | wind | 9 | 43200 | > th | dose dependent | sin | 19 | NA |
| 330 | 34.90 | wind | 7 | 43200 | > th | dose dependent | sin | 2 | NA |
| 332 | 34.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 495 | 35.09 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 496 | 35.10 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 511 | 35.12 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 528 | 35.17 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 537 | 35.18 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 541 | 35.19 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 549 | 35.19 | wind | 7 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 752 | 35.58 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 792 | 35.66 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 826 | 35.72 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 847 | 35.74 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 878 | 35.77 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 897 | 35.79 | wind | 9 | 43200 | > th | dose independent | sin | 13 | NA |
| 908 | 35.80 | wind | 9 | 43200 | < th | dose independent | sin | 14 | NA |