BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0566000 Os04g0566000|AK107723
         (106 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25720.1  | chr2:10955664-10956017 REVERSE LENGTH=118           69   7e-13

>AT2G25720.1 | chr2:10955664-10956017 REVERSE LENGTH=118
          Length = 117

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 5/55 (9%)

Query: 52  YTIDAAKRMKYEDLFPVESKKFGYDPANAAKASRSRTVEEALDDRVRKKADRYCK 106
           Y+IDAAK+ KY+DLFPVE+KKFGY P      +   + E+ALDDRV+KKADRYCK
Sbjct: 68  YSIDAAKKKKYDDLFPVEAKKFGYIP-----KANFESREDALDDRVKKKADRYCK 117



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,167,096
Number of extensions: 26520
Number of successful extensions: 52
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)