Os04g0561700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0561700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.17 | 0.405 | 8.36 | 1.34 | 1.93 | -0.557 | 1.41 | -0.921 | 0.248 | 17.9 | 37.43 | 71 | -- | -- |
| 75.85 | 0.406 | 8.36 | 1.36 | 1.93 | -0.498 | 1.41 | -- | 0.254 | 17.9 | 37.47 | 69 | -- | -- |
| 78.97 | 0.414 | 8.36 | 1.34 | 1.94 | -0.522 | -- | -0.898 | 0.25 | 17.9 | 37.44 | 70 | -- | -- |
| 80.68 | 0.418 | 8.36 | 1.33 | 1.93 | -0.476 | -- | -- | 0.248 | 17.9 | 35.76 | 69 | -- | -- |
| 102.27 | 0.471 | 8.36 | 0.921 | -- | -1.84 | -- | 0.578 | 0.0428 | -- | 0.4899 | 699 | -- | -- |
| 81.05 | 0.422 | 8.35 | 1.33 | 1.97 | -- | 1.31 | -- | 0.278 | 17.6 | -- | -- | -- | -- |
| 85.25 | 0.432 | 8.34 | 1.32 | 1.98 | -- | -- | -- | 0.284 | 17.5 | -- | -- | -- | -- |
| 90.25 | 0.442 | 8.34 | 1.37 | -- | -2.14 | -- | -- | 0.217 | -- | 1.3 | 665 | -- | -- |
| 126.57 | 0.524 | 8.37 | -- | 1.88 | -0.392 | -- | -- | 0.154 | 17.8 | 30.23 | 127 | -- | -- |
| 288.54 | 0.794 | 8.32 | 1.26 | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
| 131.39 | 0.536 | 8.38 | -- | 1.96 | -- | -- | -- | 0.136 | 17.6 | -- | -- | -- | -- |
| 118.26 | 0.506 | 8.35 | -- | -- | -2.43 | -- | -- | 0.124 | -- | 8.61e-08 | 709 | -- | -- |
| 330.31 | 0.848 | 8.35 | -- | -- | -- | -- | -- | 0.0962 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.33 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 6 |
| 2 | 66.78 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 5 | 67.30 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 7 | 67.33 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 19 | 67.96 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 32 | 68.57 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 48 | 69.01 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 7 |
| 53 | 69.12 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 57 | 69.18 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 59 | 69.31 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 82 | 69.66 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 100 | 69.93 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 103 | 70.04 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 111 | 70.11 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 116 | 70.17 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 119 | 70.20 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 125 | 70.31 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 139 | 70.44 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 141 | 70.46 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 147 | 70.50 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 2 | 7 |
| 207 | 71.05 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 209 | 71.05 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 210 | 71.05 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 216 | 71.11 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 219 | 71.12 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 222 | 71.12 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 223 | 71.12 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 224 | 71.12 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 227 | 71.12 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 242 | 71.18 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 245 | 71.19 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 247 | 71.19 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 249 | 71.19 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 263 | 71.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 265 | 71.24 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 266 | 71.24 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 269 | 71.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 270 | 71.24 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 272 | 71.24 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 275 | 71.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 280 | 71.26 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 288 | 71.28 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 8 |
| 290 | 71.28 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 305 | 71.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 311 | 71.35 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 320 | 71.38 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 328 | 71.42 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 19 |
| 329 | 71.42 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 374 | 71.58 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 380 | 71.59 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 384 | 71.60 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 5 |
| 385 | 71.60 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 389 | 71.61 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 391 | 71.61 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 392 | 71.61 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 394 | 71.61 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 395 | 71.61 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 406 | 71.62 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 410 | 71.63 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 424 | 71.68 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 428 | 71.69 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 432 | 71.69 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 436 | 71.69 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 453 | 71.72 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 470 | 71.79 | radiation | 40.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 505 | 71.88 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 534 | 71.93 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 543 | 71.96 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 574 | 72.02 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 575 | 72.02 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 577 | 72.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 578 | 72.02 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 579 | 72.02 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 582 | 72.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 586 | 72.04 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 605 | 72.08 | radiation | 40.0 | 90 | < th | dose independent | rect. | 11 | 22 |
| 610 | 72.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 23 |
| 613 | 72.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 623 | 72.11 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 14 |
| 626 | 72.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 633 | 72.14 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 18 |
| 638 | 72.15 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 639 | 72.15 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 641 | 72.16 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 646 | 72.17 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 674 | 72.22 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 680 | 72.23 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 726 | 72.30 | wind | 9.0 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 748 | 72.32 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 785 | 72.40 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 806 | 72.45 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 16 |
| 840 | 72.51 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 854 | 72.52 | humidity | 90.0 | 720 | > th | dose independent | rect. | 22 | 4 |
| 856 | 72.52 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 13 |
| 911 | 72.58 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 10 |
| 926 | 72.60 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 929 | 72.61 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 955 | 72.63 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 9 | 6 |
| 976 | 72.65 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 9 |