BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0561700 Os04g0561700|AK067397
         (450 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20410.1  | chr1:7079049-7082504 REVERSE LENGTH=505            439   e-123

>AT1G20410.1 | chr1:7079049-7082504 REVERSE LENGTH=505
          Length = 504

 Score =  439 bits (1129), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/433 (51%), Positives = 295/433 (68%), Gaps = 39/433 (9%)

Query: 14  LLSDDGVEPLRSVSPIDNVTSIISEAVQREGHQVDEFSLEISLPAVIAANDRAIRLYMKE 73
           + SD   E ++S S  D V  I ++ V+++ H+ D F LE+S+P+ I  N+RA+  Y+K 
Sbjct: 108 VFSDVKKELVKSDSSSDYVARI-TDLVKQDRHEFDSFGLEVSVPSTIMENERALLSYLKG 166

Query: 74  KYGSANWFDEKIFSQQTMSVKEALRILLVPSVEKQMNVKHGNNSFRIRLTYTHDEGSQKL 133
           KY +  W       +  +SVK+AL++LL+  ++  +  +  ++SF IRLTYT      + 
Sbjct: 167 KYSTEVWLQ-----RDKISVKDALKVLLLDQLKASLGAESDSSSFHIRLTYTKASDEAQG 221

Query: 134 LRLLPNDRGRKRKTESRDGSSKRGSTDDDKQILSESDAFINKNLEGIQDQDFRSLFQLPP 193
                ++  ++RKT++ +GS+                         I +  F        
Sbjct: 222 ASETTHE-SKRRKTDAENGSN------------------------CISENSF-------- 248

Query: 194 EKVLEPCHLVISCQRSPIYIGGRYLKLSRNVSQSCWIIDDERMGEASVEEIIGENVRAIC 253
           EKV EPC   + C R PI+  GRY K SRNVSQS WIIDDERMGEASVEEI+G N+   C
Sbjct: 249 EKVYEPCIFSVHCNRMPIFFSGRYFKYSRNVSQSRWIIDDERMGEASVEEILGGNILPAC 308

Query: 254 KGDGYKFHAAGREDIDVRMLGSGRPFLVEVLNVRSIPSATEVQQIADKINDSEKKHVRVR 313
            GD YKFHAAGREDIDVRMLGSGRPFL+EV N R +PS   ++++ +KIN SEKK V V+
Sbjct: 309 LGDSYKFHAAGREDIDVRMLGSGRPFLIEVQNSRQLPSEQSLKEVEEKINKSEKKLVGVK 368

Query: 314 NLKLVGSEIWTMMREGEAEKQKQYAALIWTSRPLTDDDLHNISLIKDMEIVQKTPIRVLH 373
           +LK +GS+ W MMREGEAEKQKQY AL+W SRPL + D ++IS +K+++I+QKTP+RVLH
Sbjct: 369 DLKCIGSQCWAMMREGEAEKQKQYVALVWISRPLEEKDFNSISCLKELKILQKTPVRVLH 428

Query: 374 RRSPLERKRIIHWMEIAKISGGSNYYLLHLCTQAGTYIKEFVHGDLGRTHPSVGVMLSCR 433
           RRSPL+R++IIHWM++ KI G S+Y+LLHLCTQAGTYIKEFVHGDLGRT PS+G +L CR
Sbjct: 429 RRSPLDREKIIHWMKVEKIKGHSHYFLLHLCTQAGTYIKEFVHGDLGRTTPSMGSILGCR 488

Query: 434 AEILQLDVTDVKM 446
           AEI+QLDVTDVKM
Sbjct: 489 AEIIQLDVTDVKM 501



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,910,181
Number of extensions: 431427
Number of successful extensions: 1194
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1191
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 348
Effective length of database: 8,310,137
Effective search space: 2891927676
Effective search space used: 2891927676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)