Os04g0560700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 29 (alpha-L-fucosidase) protein.
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Os04g0560700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 29 (alpha-L-fucosidase) protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.55 | 0.406 | 8.48 | -1.6 | 0.903 | -1.85 | -0.561 | -3.52 | -0.418 | 3.97 | 10.1 | 94 | -- | -- |
| 81.91 | 0.422 | 8.41 | -1.11 | 0.936 | -1.85 | 0.345 | -- | -0.284 | 3.97 | 0.6274 | 77 | -- | -- |
| 75.17 | 0.404 | 8.47 | -1.54 | 0.908 | -1.83 | -- | -3.04 | -0.403 | 3.81 | 3.936 | 114 | -- | -- |
| 82.24 | 0.422 | 8.41 | -1.11 | 0.933 | -1.88 | -- | -- | -0.282 | 4.03 | 3.474 | 78 | -- | -- |
| 104.24 | 0.476 | 8.43 | -1.27 | -- | -2.18 | -- | -1.5 | -0.227 | -- | 21.31 | 107 | -- | -- |
| 115.23 | 0.503 | 8.47 | -1.48 | 1.45 | -- | 0.728 | -- | -0.542 | 3.62 | -- | -- | -- | -- |
| 116.83 | 0.506 | 8.47 | -1.49 | 1.45 | -- | -- | -- | -0.547 | 3.66 | -- | -- | -- | -- |
| 105.9 | 0.479 | 8.39 | -0.983 | -- | -2.25 | -- | -- | -0.162 | -- | 21.63 | 108 | -- | -- |
| 111.21 | 0.491 | 8.37 | -- | 0.76 | -2.42 | -- | -- | -0.0934 | 4.15 | 10.18 | 93 | -- | -- |
| 234.15 | 0.715 | 8.47 | -1.43 | -- | -- | -- | -- | -0.508 | -- | -- | -- | -- | -- |
| 175.4 | 0.62 | 8.43 | -- | 1.42 | -- | -- | -- | -0.381 | 3.67 | -- | -- | -- | -- |
| 129.92 | 0.531 | 8.36 | -- | -- | -2.48 | -- | -- | -0.0154 | -- | 21.05 | 108 | -- | -- |
| 288.09 | 0.792 | 8.44 | -- | -- | -- | -- | -- | -0.349 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 18 | 73.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 23 | 73.88 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 25 | 74.11 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 28 | 74.22 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 35 | 74.56 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 62 | 75.77 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 85 | 76.51 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 86 | 76.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 96 | 76.81 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 99 | 76.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 103 | 77.00 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 104 | 77.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 108 | 77.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 113 | 77.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 123 | 77.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 146 | 77.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 160 | 78.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 170 | 78.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 219 | 79.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 222 | 79.03 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 269 | 79.76 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 284 | 79.94 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 304 | 80.13 | temperature | 20 | 90 | > th | dose dependent | sin | 22 | NA |
| 324 | 80.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 363 | 80.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 387 | 81.10 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 390 | 81.12 | temperature | 10 | 10 | > th | dose dependent | sin | 20 | NA |
| 422 | 81.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 475 | 81.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 503 | 81.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 732 | 83.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 963 | 85.21 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 19 |