BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0560700 Os04g0560700|AK120795
         (148 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17710.1  | chr2:7693856-7694554 FORWARD LENGTH=153             57   3e-09

>AT2G17710.1 | chr2:7693856-7694554 FORWARD LENGTH=153
          Length = 152

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 28/109 (25%)

Query: 30  TAEKEAARIKAKTLMIEDYAIFEQMIR-EILEEGIKGDSARAERDITTNGAAATKSTEGR 88
           +A K AAR++A+ L  EDY  FE+ +  E LE                        TE  
Sbjct: 62  SAIKAAARVRARNLSDEDYKRFEESLDMEDLE------------------------TEDH 97

Query: 89  IGIKDWWRKSTYAYLNEPAMTSTDENGRRKHAIKYIPQERCMNFFSSIP 137
            G+KDWW KS YAYLN+PA+ S D   R++ +  Y P   C +F    P
Sbjct: 98  QGLKDWWTKSKYAYLNQPALGSADSLKRKRFST-YTPN--CFSFKPCNP 143



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,517,442
Number of extensions: 89111
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 59
Effective length of database: 8,666,545
Effective search space: 511326155
Effective search space used: 511326155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)