Os04g0550700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0550700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.28 | 0.333 | 10.2 | -1.27 | 0.25 | 1.53 | -0.756 | 0.121 | -0.465 | 10.7 | 15.29 | 14 | -- | -- |
| 50.29 | 0.33 | 10.2 | -1.29 | 0.251 | 1.53 | -0.734 | -- | -0.468 | 10.7 | 15.3 | 14 | -- | -- |
| 52.22 | 0.337 | 10.2 | -1.36 | 0.291 | 1.47 | -- | -0.363 | -0.47 | 11.1 | 15.45 | 18 | -- | -- |
| 52.45 | 0.337 | 10.2 | -1.31 | 0.268 | 1.5 | -- | -- | -0.466 | 11.1 | 15.2 | 19 | -- | -- |
| 55.52 | 0.347 | 10.2 | -1.48 | -- | 1.64 | -- | -0.748 | -0.546 | -- | 16.8 | 11 | -- | -- |
| 74.5 | 0.405 | 10.1 | -0.997 | 0.644 | -- | -0.406 | -- | -0.245 | 13.1 | -- | -- | -- | -- |
| 75.16 | 0.406 | 10.1 | -1.01 | 0.646 | -- | -- | -- | -0.247 | 13.2 | -- | -- | -- | -- |
| 55.96 | 0.348 | 10.2 | -1.36 | -- | 1.66 | -- | -- | -0.497 | -- | 15.91 | 10 | -- | -- |
| 93.48 | 0.453 | 10.1 | -- | 0.423 | 0.874 | -- | -- | -0.241 | 12.7 | 15.2 | 19 | -- | -- |
| 100.98 | 0.47 | 10.2 | -1.04 | -- | -- | -- | -- | -0.26 | -- | -- | -- | -- | -- |
| 102.13 | 0.473 | 10.1 | -- | 0.663 | -- | -- | -- | -0.134 | 13.3 | -- | -- | -- | -- |
| 100.85 | 0.468 | 10.2 | -- | -- | 1.12 | -- | -- | -0.299 | -- | 18.6 | 4 | -- | -- |
| 129.32 | 0.531 | 10.1 | -- | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 5 | 47.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 24 | 49.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 29 | 49.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 38 | 50.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 39 | 50.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 44 | 50.35 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 46 | 50.37 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 68 | 50.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 75 | 51.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 78 | 51.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 82 | 51.24 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 85 | 51.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 93 | 51.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 110 | 51.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 115 | 51.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 116 | 51.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 122 | 51.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 186 | 52.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 191 | 52.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 12 |
| 207 | 52.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 217 | 52.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 227 | 52.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 341 | 53.35 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 343 | 53.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 394 | 53.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 404 | 53.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 465 | 53.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 496 | 53.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 2 |
| 500 | 53.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 505 | 54.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 513 | 54.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 7 |
| 657 | 54.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 675 | 54.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 738 | 54.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 860 | 54.80 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 964 | 54.97 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |