BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0550700 Os04g0550700|AK106156
(372 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25170.2 | chr4:12909740-12911389 FORWARD LENGTH=360 90 2e-18
AT5G61490.1 | chr5:24732642-24733666 FORWARD LENGTH=261 82 5e-16
>AT4G25170.2 | chr4:12909740-12911389 FORWARD LENGTH=360
Length = 359
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 38/261 (14%)
Query: 131 DEHAEAFGAPPTDQEVRAAVASIQEVFENHPGLDSDAPAQALALSPISGLPPSGMFVNYF 190
+E FG+ P+ EV+ AV+++Q Q+L L + P+ + +
Sbjct: 113 EEDDSLFGSVPSVDEVQDAVSALQ---------------QSLKLFQLCLRDPTQLVFDAS 157
Query: 191 SEGSTPSDIKIEDSTPSDVKIDQ---LASLEHSTPDTASE-ECIEPAMLVLNSTALLTRE 246
S D K E P + +Q + H P S+ + +EP+M + +S L
Sbjct: 158 SYSQLVRD-KYE-CYPENGGGNQSPIATGMVHQVPSFGSDSDWMEPSMHLCHSRTLKPHA 215
Query: 247 HRNVLDAFHLLQVDSSVQKMVMALSTDKSVWDAVMKNEVVQEFRKSFQDAKEADPNGS-- 304
+ V +AF LL+ + SVQKMV++LS+DK+VW+AVM N+VV+E R + + D S
Sbjct: 216 YDQVYNAFDLLRTEPSVQKMVVSLSSDKAVWEAVMNNDVVREIRDLYNNGISQDEENSED 275
Query: 305 ----SSASPGVMKWVMETTQAKIKEFLESILKLVNMLFQAQSED-----------YDLYD 349
++A+ +KWV + T K E I K+V LF + D + +
Sbjct: 276 TPRENNAATDFIKWVFDNTMVKATEVFVKITKVVTELFNCYNGDGVNNKGKDAKFNNWLE 335
Query: 350 DTVRMSFMLAVFVFIVVTVAR 370
+ + S +L++ V +VV V+R
Sbjct: 336 EKLTTSVLLSIIVMLVVMVSR 356
>AT5G61490.1 | chr5:24732642-24733666 FORWARD LENGTH=261
Length = 260
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 87/150 (58%), Gaps = 13/150 (8%)
Query: 230 IEPAMLVLNSTALLTREHRNVLDAFHLLQVDSSVQKMVMALSTDKSVWDAVMKNEVVQEF 289
IEP++ + N++ L + DAFH+ Q D SVQ+MVM+L++DK+VWDAVM NEVV+E
Sbjct: 112 IEPSLQLCNTSLLQPFMLDRLYDAFHVFQTDPSVQRMVMSLTSDKAVWDAVMNNEVVREL 171
Query: 290 RKSFQDAKEADPNGSSSASPGVMKWVMETTQAKIKEFLESILKLVNMLFQAQSEDYDLY- 348
+A+ ++ + S+A+ ++ + E + KI + +E + K V LF D +
Sbjct: 172 ---ISNAERSEEDSGSAAN--FLRRLFERSAVKIMDAMERVTKYVTDLFNVVPGDETVVL 226
Query: 349 -------DDTVRMSFMLAVFVFIVVTVARI 371
+ ++M+ +LA+ V ++V V R+
Sbjct: 227 ASGAAPKMEKLQMTVLLAIVVLLIVLVTRV 256
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,444,760
Number of extensions: 224823
Number of successful extensions: 723
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,364,969
Effective search space: 2275271568
Effective search space used: 2275271568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)