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Os04g0550600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Carotenoid oxygenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.36 (0.0382) R2 : 0.653
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.64 (0.133) R2dC : 1.16 R2C : 0.419
β3 : 1.7 (0.139) R2dE : 0.231 R2E : -0.515
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.098 (0.0799) R2dN8 : 0.00448 R2N8 : -0.00725
σ : 0.712
deviance : 233.94
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C
peak time of C : 9.45
E
wheather : humidity
threshold : 48.37
memory length : 64
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.5
open length of G : 6.06

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
220.11 0.697 6.37 -0.75 3.64 1.69 1.08 0.913 0.125 9.42 49.72 82 19.3 6.17
221.37 0.693 6.36 -0.723 3.65 1.69 0.541 -- 0.0917 9.38 48.74 58 19.6 6.08
223.29 0.696 6.38 -0.753 3.67 1.67 -- 0.707 0.111 9.35 50.77 64 19.5 6.05
221.52 0.693 6.36 -0.727 3.65 1.69 -- -- 0.0908 9.41 48.66 54 19.6 6.07
286.34 0.788 6.47 -0.742 -- 2.2 -- 0.234 0.0818 -- -13.96 732 23.4 6.45
281.01 0.786 6.41 -0.71 2.59 -- 0.168 -- 0.0596 8.63 -- -- -- --
281.1 0.785 6.41 -0.705 2.59 -- -- -- 0.0595 8.62 -- -- -- --
277.64 0.776 6.51 -0.761 -- 2.68 -- -- 0.0234 -- 13.09 689 22.8 8.1
233.94 0.712 6.36 -- 3.64 1.7 -- -- 0.098 9.45 48.37 64 19.5 6.06
659.45 1.2 6.48 -0.697 -- -- -- -- 0.0823 -- -- -- -- --
294.2 0.802 6.39 -- 2.59 -- -- -- 0.138 8.64 -- -- -- --
289.94 0.793 6.46 -- -- 2.8 -- -- 0.155 -- 10.23 655 22.7 9.03
672.28 1.21 6.46 -- -- -- -- -- 0.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 223.16 wind 7.0 43200 < th dose independent rect. 23 12
2 223.21 temperature 30.0 270 < th dose independent rect. 17 7
3 223.46 humidity 50.0 90 > th dose dependent rect. 19 6
6 223.63 wind 7.0 43200 > th dose independent rect. 23 12
12 224.40 humidity 60.0 270 > th dose independent rect. 17 7
23 225.51 wind 9.0 90 < th dose independent rect. 1 18
26 225.66 radiation 20.0 14400 < th dose dependent rect. 21 6
29 225.86 atmosphere 1000.0 90 > th dose independent rect. 19 6
30 225.88 radiation 30.0 10 < th dose dependent rect. 2 18
31 226.00 temperature 15.0 90 > th dose independent rect. 19 6
32 226.13 wind 5.0 43200 > th dose dependent rect. 23 12
38 226.38 atmosphere 1000.0 10 > th dose independent rect. 20 6
40 226.49 humidity 70.0 90 > th dose independent rect. 19 6
57 227.14 radiation 10.0 270 < th dose dependent rect. 17 7
60 227.25 humidity 50.0 10 > th dose dependent rect. 20 6
68 227.35 temperature 30.0 90 < th dose independent rect. 19 6
69 227.35 humidity 50.0 90 > th dose independent rect. 19 6
72 227.35 radiation 1.0 90 < th dose independent rect. 19 6
77 227.35 temperature 10.0 90 > th dose independent rect. 1 18
78 227.35 atmosphere 1015.0 90 < th dose independent rect. 1 18
79 227.35 radiation 1.0 90 < th dose dependent rect. 19 6
86 227.43 wind 9.0 90 < th dose independent rect. 19 6
87 227.45 temperature 15.0 10 > th dose independent rect. 20 6
89 227.56 wind 9.0 270 < th dose independent rect. 14 14
105 227.99 precipitation 0.1 90 < th dose independent rect. 19 6
106 227.99 precipitation 0.1 90 < th dose dependent rect. 19 6
107 228.01 wind 1.0 43200 > th dose independent rect. 17 1
110 228.05 wind 9.0 10 < th dose independent rect. 2 18
112 228.09 temperature 25.0 43200 < th dose dependent rect. 8 1
114 228.22 precipitation 0.1 10 < th dose independent rect. 2 18
116 228.22 precipitation 0.1 10 < th dose dependent rect. 2 18
118 228.24 atmosphere 1005.0 43200 > th dose independent rect. 15 2
123 228.31 atmosphere 1005.0 43200 > th dose independent rect. 15 4
132 228.43 precipitation 0.1 90 < th dose independent rect. 1 18
135 228.43 precipitation 0.1 90 < th dose dependent rect. 1 18
136 228.45 wind 3.0 43200 > th dose dependent rect. 24 4
159 228.81 atmosphere 1005.0 43200 < th dose independent rect. 16 3
163 228.85 temperature 30.0 43200 < th dose dependent rect. 12 1
164 228.86 temperature 25.0 43200 > th dose independent rect. 16 1
166 228.86 temperature 30.0 10 < th dose independent rect. 20 6
167 228.86 humidity 50.0 10 > th dose independent rect. 20 6
171 228.86 radiation 1.0 10 < th dose independent rect. 20 6
176 228.86 temperature 10.0 10 > th dose independent rect. 2 18
178 228.86 atmosphere 1015.0 10 < th dose independent rect. 2 18
179 228.86 radiation 1.0 10 < th dose dependent rect. 20 6
190 228.93 radiation 1.0 43200 < th dose independent rect. 6 1
191 228.93 wind 9.0 10 < th dose independent rect. 20 6
198 228.98 temperature 10.0 43200 > th dose dependent rect. 16 1
201 229.00 radiation 1.0 43200 > th dose independent rect. 6 1
203 229.03 temperature 30.0 43200 < th dose dependent rect. 16 1
204 229.03 temperature 30.0 43200 < th dose dependent rect. 12 5
207 229.05 radiation 10.0 270 < th dose independent rect. 17 7
247 229.25 wind 7.0 43200 < th dose independent rect. 7 4
266 229.34 wind 7.0 43200 > th dose independent rect. 7 4
317 229.55 temperature 25.0 43200 > th dose independent rect. 8 10
319 229.57 temperature 25.0 43200 > th dose independent rect. 8 5
320 229.57 precipitation 0.1 10 < th dose independent rect. 20 6
321 229.57 precipitation 0.1 10 < th dose dependent rect. 20 6
356 229.70 temperature 25.0 43200 < th dose independent rect. 15 3
365 229.72 temperature 25.0 43200 < th dose independent rect. 16 1
367 229.72 temperature 25.0 43200 > th dose independent rect. 11 7
388 229.80 temperature 25.0 43200 < th dose independent rect. 8 4
393 229.81 temperature 30.0 43200 < th dose dependent sin 0 NA
406 229.84 temperature 25.0 43200 < th dose independent rect. 8 10
413 229.85 wind 1.0 43200 > th dose dependent rect. 2 2
434 229.89 precipitation 0.1 43200 > th dose independent rect. 5 5
435 229.89 temperature 15.0 270 > th dose independent rect. 4 9
447 229.90 humidity 90.0 43200 > th dose dependent rect. 9 8
451 229.91 precipitation 0.1 43200 > th dose dependent rect. 5 5
465 229.94 precipitation 0.1 270 < th dose independent rect. 4 10
471 229.94 precipitation 0.1 270 < th dose dependent rect. 4 10
475 229.95 precipitation 0.1 43200 < th dose independent rect. 5 5
480 229.95 precipitation 0.1 43200 < th dose dependent rect. 5 5
503 229.99 wind 9.0 43200 < th dose dependent rect. 2 2
577 230.07 atmosphere 1005.0 43200 > th dose dependent rect. 3 1
629 230.15 temperature 25.0 43200 < th dose independent rect. 11 7
673 230.19 temperature 20.0 43200 > th dose independent rect. 5 1
707 230.23 temperature 20.0 43200 < th dose independent rect. 5 1
713 230.24 wind 7.0 43200 < th dose independent rect. 9 1
761 230.27 precipitation 0.1 43200 > th dose dependent rect. 5 9
784 230.29 temperature 25.0 43200 > th dose independent rect. 11 1
786 230.29 temperature 10.0 43200 > th dose dependent sin 23 NA
886 230.36 precipitation 0.1 43200 > th dose independent rect. 5 9
908 230.38 temperature 10.0 43200 > th dose dependent rect. 9 1
973 230.43 atmosphere 995.0 270 > th dose independent rect. 4 10
974 230.43 atmosphere 1015.0 270 < th dose independent rect. 4 10
975 230.43 precipitation 0.1 43200 < th dose independent rect. 4 10
978 230.43 temperature 10.0 270 > th dose independent rect. 14 14
983 230.43 precipitation 0.1 43200 < th dose dependent rect. 4 10