BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0550600 Os04g0550600|AK109771
         (609 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44990.1  | chr2:18558938-18561621 FORWARD LENGTH=630          566   e-161

>AT2G44990.1 | chr2:18558938-18561621 FORWARD LENGTH=630
          Length = 629

 Score =  566 bits (1458), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/570 (49%), Positives = 383/570 (67%), Gaps = 22/570 (3%)

Query: 53  FWDYNLLFRSQRDECLDSIPLRVTEGAIPPDFPAGTYYLAGPGIFSDDHGSTVHPLDGHG 112
           F DY  LF SQR E ++ + ++  EG+IP +FP+GTYYLAGPG+F+DDHGSTVHPLDGHG
Sbjct: 58  FRDYQSLFVSQRSETIEPVVIKPIEGSIPVNFPSGTYYLAGPGLFTDDHGSTVHPLDGHG 117

Query: 113 YLRSFRFRPGDRTIHYSARFVETAAKREESRDGA-SWRFTHRGPFSVLQXXXXXXXXXXX 171
           YLR+F      R   ++A++V+T AK+EE      +WRFTHRGPFSVL+           
Sbjct: 118 YLRAFHIDGNKRKATFTAKYVKTEAKKEEHDPVTDTWRFTHRGPFSVLKGGKRFGNTKVM 177

Query: 172 XXXXXTSVLRWGGRLLCLWEGGQPYEVDPRTLETVGPFDLLGLAAADDNKATNASAARRP 231
                TSVL+W GRLLCLWEGG+PYE++  +L+TVG F++      ++N   +       
Sbjct: 178 KNVANTSVLKWAGRLLCLWEGGEPYEIESGSLDTVGRFNV------ENNGCESCDDDDSS 231

Query: 232 WLQEAG---LDAAARLLRPVLSGVFDMPGKRLLAHYKIDPRRGRLLMVACNAEDMLLPRS 288
               +G    D AA LL+P+L GVF MP KR L+HYK+D RR RLL V CNAEDMLLPRS
Sbjct: 232 DRDLSGHDIWDTAADLLKPILQGVFKMPPKRFLSHYKVDGRRKRLLTVTCNAEDMLLPRS 291

Query: 289 HFTFYEFDAHFDLVQKREFVVPDHLMIHDWAFTDTHYILLGNRIKLDIPGSLLALTGTHP 348
           +FTF E+D+ F L+Q +EF + DH+MIHDWAFTDTHYIL  NR+KL+  GS+ A+ G  P
Sbjct: 292 NFTFCEYDSEFKLIQTKEFKIDDHMMIHDWAFTDTHYILFANRVKLNPIGSIAAMCGMSP 351

Query: 349 MIAALAVDPRRQSTPVYLLPR-SPETEAGGRDWSVPIEAPSQMWSVHVGNAFEEANRRGG 407
           M++AL+++P  +S+P+Y+LPR S +   GGRDW VP+E  SQ+W +H GNA+E     G 
Sbjct: 352 MVSALSLNPSNESSPIYILPRFSDKYSRGGRDWRVPVEVSSQLWLIHSGNAYETREDNGD 411

Query: 408 LDVRLHMSSCSYQWFHFHRMFGYNWHHKKLDPSFMNAAKGKE-WLPRLVQVAIELDRTGE 466
           L +++  S+CSY+WF F +MFGY+W   KLDPS MN  +G +  LP LV+V++ LD TG 
Sbjct: 412 LKIQIQASACSYRWFDFQKMFGYDWQSNKLDPSVMNLNRGDDKLLPHLVKVSMTLDSTGN 471

Query: 467 CRRCSVRRLSDQHARPADFPAINPSYANQRNRFVYAGAASGSRRFLPYFPFXXXXXXXXX 526
           C  C V  L+  + +P+DFP IN S++ ++N+++Y+ A+SG+R  LP+FPF         
Sbjct: 472 CNSCDVEPLNGWN-KPSDFPVINSSWSGKKNKYMYSAASSGTRSELPHFPFDMVVKFDLD 530

Query: 527 XXXARWWSTDGRKFVGEPVFVPTGG-----GEDGGYVLLVEYAVSKHRCHLVVLDAKKIG 581
               R WST  R+FVGEP+FVP         ED GY+++VEYAVS  RC+LV+LDAKKIG
Sbjct: 531 SNLVRTWSTGARRFVGEPMFVPKNSVEEGEEEDDGYIVVVEYAVSVERCYLVILDAKKIG 590

Query: 582 TENALVA---KLEVPKNLTFPMGFHGFWGD 608
             +A+V+   K+ + K + + +  H F+ D
Sbjct: 591 ESDAVVSSVNKVYIAK-INYIICVHSFYFD 619



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.140    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,726,183
Number of extensions: 539872
Number of successful extensions: 866
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 505
Effective length of database: 8,255,305
Effective search space: 4168929025
Effective search space used: 4168929025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 115 (48.9 bits)