Os04g0549300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GA protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0549300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to GA protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.06 | 0.262 | 10.1 | -1.62 | 0.137 | -0.998 | 0.379 | -0.093 | -0.34 | 4.74 | 29.42 | 10 | -- | -- |
| 31.02 | 0.261 | 10.1 | -1.63 | 0.132 | -0.989 | 0.343 | -- | -0.339 | 4.83 | 29.46 | 7 | -- | -- |
| 31.31 | 0.263 | 10.1 | -1.64 | 0.129 | -0.969 | -- | 0.0958 | -0.342 | 5.17 | 29.42 | 10 | -- | -- |
| 31.3 | 0.261 | 10.1 | -1.63 | 0.131 | -0.974 | -- | -- | -0.339 | 5.11 | 29.43 | 2 | -- | -- |
| 31.92 | 0.265 | 10.1 | -1.61 | -- | -0.9 | -- | 0.0182 | -0.331 | -- | 28.3 | 4 | -- | -- |
| 44.4 | 0.312 | 10.1 | -1.39 | 0.254 | -- | -0.0902 | -- | -0.144 | 12.8 | -- | -- | -- | -- |
| 44.43 | 0.312 | 10.1 | -1.4 | 0.254 | -- | -- | -- | -0.145 | 12.7 | -- | -- | -- | -- |
| 31.9 | 0.263 | 10.1 | -1.61 | -- | -0.903 | -- | -- | -0.333 | -- | 28.18 | 2 | -- | -- |
| 94.37 | 0.455 | 10 | -- | 0.181 | -0.308 | -- | -- | -0.0421 | 12.3 | 29.43 | 2 | -- | -- |
| 48.46 | 0.325 | 10.1 | -1.41 | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
| 95.83 | 0.458 | 10 | -- | 0.276 | -- | -- | -- | 0.0109 | 13 | -- | -- | -- | -- |
| 95.89 | 0.458 | 10 | -- | -- | -0.463 | -- | -- | -0.0681 | -- | 29.9 | 2 | -- | -- |
| 100.57 | 0.468 | 10 | -- | -- | -- | -- | -- | 0.00681 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 2 | 30.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 7 | 30.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 11 | 31.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 14 | 31.12 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 16 | 31.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 18 | 31.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 22 | 31.25 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 24 | 31.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 45 | 31.41 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 64 | 31.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 71 | 31.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 77 | 31.57 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 78 | 31.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 111 | 31.66 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 118 | 31.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 126 | 31.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 129 | 31.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 156 | 31.73 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 170 | 31.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 183 | 31.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 458 | 32.00 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 516 | 32.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 584 | 32.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 641 | 32.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 643 | 32.12 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 644 | 32.12 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 778 | 32.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 17 |